Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30266
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 55 1e-08
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 37 0.002
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 34 0.017
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 33 0.029
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 31 0.16
SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein Smd2|Schizosaccharo... 28 1.4
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 27 1.9
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 5.8
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po... 25 7.7
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/48 (47%), Positives = 32/48 (66%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN 252
KM +N+ + V +D RTF+G AFD MNL+L DC+E+R IK +N
Sbjct: 5 KMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQN 52
Score = 33.1 bits (72), Expect = 0.038
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +3
Query: 270 EEKRTLGFVLLRGENIVSLTI 332
EEKR LG V+LRGE IVSL++
Sbjct: 60 EEKRMLGLVILRGEFIVSLSV 80
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +1
Query: 133 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQT 267
RV+VI D R +G+ K FD NLIL D F +I S ++ ++T
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSD--SFERIISMDQDMET 52
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 34.3 bits (75), Expect = 0.017
Identities = 19/50 (38%), Positives = 27/50 (54%)
Frame = +1
Query: 136 VRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
V V L+ R G A+D+H+N++LGD EE I +T+K K L
Sbjct: 22 VYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDE---ETDKDKAL 68
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 33.5 bits (73), Expect = 0.029
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
MTI + + I + VI++ R F GT FD ++N++L D E+ + K
Sbjct: 3 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEK 59
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
+ ++ + R++ R G K FD+ MNL+L D EE
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEE 66
>SPAC2C4.03c |smd2|cwf9|Sm snRNP core protein
Smd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 115
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/50 (24%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +1
Query: 85 KMTIGKNNKMQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEE 228
+ + G + +QQ + +V++ ++++ + KAFD+H N++L + +E
Sbjct: 24 EFSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKE 73
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/49 (28%), Positives = 24/49 (48%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+QQH + + Q G + FD+ MN++L D + + +KN K
Sbjct: 20 LQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ---VDAKNNK 65
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 5.8
Identities = 23/68 (33%), Positives = 31/68 (45%)
Frame = +1
Query: 82 DKMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL 261
DK + +N + H N R L R + KA D +L D R +K+ +K
Sbjct: 1075 DKTSPWRNRENLSHNNNTTRASL---RELLEQEKA-DASTTTVLSDS---RFMKAPTKKS 1127
Query: 262 QTEKKKEL 285
Q EKKKEL
Sbjct: 1128 QREKKKEL 1135
>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 215 VIAKNSEKLNLKIENCRQRRKKNFGFCSFTW 307
VI KN EKL + N RR ++ +TW
Sbjct: 156 VIRKNIEKLACLVHNEAMRRCSSYTSAIYTW 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,193,034
Number of Sequences: 5004
Number of extensions: 35163
Number of successful extensions: 102
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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