Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30266
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0479 + 3606663-3607448 79 4e-15
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 36 0.030
06_03_1120 - 27765613-27765963 33 0.21
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 32 0.49
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 31 0.64
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 31 0.85
05_03_0462 - 14316486-14316602,14316689-14316793,14318406-143184... 30 1.5
02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619 30 1.5
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 30 2.0
01_07_0305 - 42631214-42631330,42631423-42631527,42633208-426332... 30 2.0
03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509 29 2.6
02_05_0887 + 32516255-32517292 29 4.5
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 28 6.0
>07_01_0479 + 3606663-3607448
Length = 261
Score = 78.6 bits (185), Expect = 4e-15
Identities = 37/79 (46%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI---KSKNRK 258
M+ K +KM Q +NYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ KS
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKTT 60
Query: 259 LQTEKKKELWVLFFYVEKI 315
+ E+++ L +L E++
Sbjct: 61 GEREERRTLGLLLLRGEEV 79
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = +3
Query: 258 TADREEKRTLGFVLLRGENIVSLTI 332
T +REE+RTLG +LLRGE +VS+T+
Sbjct: 60 TGEREERRTLGLLLLRGEEVVSMTV 84
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 35.9 bits (79), Expect = 0.030
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ R+ V L+ R G A+D+H+N+ILGD EE
Sbjct: 27 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 61
>06_03_1120 - 27765613-27765963
Length = 116
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFR 234
K+++ + R+ V + D R F+G F DK N++L D E+R
Sbjct: 24 KLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYR 65
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 31.9 bits (69), Expect = 0.49
Identities = 11/44 (25%), Positives = 29/44 (65%)
Frame = +1
Query: 97 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
G+ ++++++ ++++ L +R +GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTVE 48
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ ++ + VI D R +GT + FD+ N+IL + E
Sbjct: 8 LESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 112 MQQHINYRVRVIL--QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
M Q I R+++ L Q G FD++MNL+L D EE +K RK
Sbjct: 10 MTQPIKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEI-NVKKDTRK 59
>05_03_0462 -
14316486-14316602,14316689-14316793,14318406-14318486,
14318593-14318610
Length = 106
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 31/53 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
N +V + ++++ +G +AFD+H N++L E R++ ++ K KKK L
Sbjct: 31 NTQVLINCRNNKKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 80
>02_04_0280 - 21548920-21549032,21549379-21549397,21549555-21550619
Length = 398
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 115 QQHINYRVRVILQDSRTFIGTFKAFDKHMN 204
+Q++N + R + D +FIG++K KH+N
Sbjct: 152 RQYLNRKKRACMHDGCSFIGSYKELCKHVN 181
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 231
I ++ VI++ + +GT FD ++N++L D E+
Sbjct: 88 IGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEY 123
>01_07_0305 -
42631214-42631330,42631423-42631527,42633208-42633216,
42635198-42636142,42636349-42636450,42637210-42637302
Length = 456
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/51 (31%), Positives = 29/51 (56%)
Frame = +1
Query: 133 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
+V + Q+++ +G +AFD H N++L E R++ ++ K KKK L
Sbjct: 383 KVLINCQNNKKLLGRVRAFDSHCNMVL---ENVREMWTEVPKTGKGKKKAL 430
>03_02_0337 + 7594259-7594319,7594455-7595205,7596323-7596509
Length = 332
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 564 ASSRNDGSSSWHGSLWARTGSSRNAT 641
AS+ D +SW G +WART + +AT
Sbjct: 61 ASATVDAPASWSGRMWARTLCAEDAT 86
>02_05_0887 + 32516255-32517292
Length = 345
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +1
Query: 115 QQHINYRVRVILQDSRTFIGTFKAFDKHM 201
+ ++N + R +QD +F+GT+K KH+
Sbjct: 149 RSYLNGKRRTCMQDGCSFVGTYKELRKHV 177
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +1
Query: 181 KAFDKHMNLILGDCEEFRKIKSKNRK 258
K FD++MNL+L + EE IK RK
Sbjct: 97 KGFDEYMNLVLDEAEEI-NIKKDTRK 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,680,297
Number of Sequences: 37544
Number of extensions: 213796
Number of successful extensions: 726
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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