Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30266
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)                   98   7e-21
SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)               44   1e-04
SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)                   33   0.22 
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)           31   0.66 
SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)                   29   2.7  
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)                       29   4.6  
SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_12681| Best HMM Match : LSM (HMM E-Value=5.7e-18)
          Length = 327

 Score = 97.9 bits (233), Expect = 7e-21
 Identities = 44/67 (65%), Positives = 53/67 (79%)
 Frame = +1

Query: 85  KMTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQ 264
           K TIGK++KM  HINYR+R  LQD R FIGTF AFDKHMN+ILGDC+EFRKIK K+ K Q
Sbjct: 23  KPTIGKSSKMLLHINYRMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQ 82

Query: 265 TEKKKEL 285
             ++K +
Sbjct: 83  EREEKRV 89



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/26 (65%), Positives = 22/26 (84%)
 Frame = +3

Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
           K  +REEKR LG VLLRGE++VS+T+
Sbjct: 80  KAQEREEKRVLGLVLLRGEHLVSMTV 105


>SB_2028| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 681

 Score = 44.0 bits (99), Expect = 1e-04
 Identities = 18/44 (40%), Positives = 28/44 (63%)
 Frame = +1

Query: 100 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEF 231
           +  +++  +N  +RV + D RT IG+F   DK  N+ILG C+EF
Sbjct: 29  QRKELESWLNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEF 72


>SB_26035| Best HMM Match : LSM (HMM E-Value=6.1e-13)
          Length = 75

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +1

Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
           ++ R+ V +++ R   G   A+D+H+N+IL D EE
Sbjct: 24  LDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEE 58


>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
          Length = 661

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +1

Query: 100 KNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKK- 276
           ++ +M +H  YR  + L+DS  F    +      NL L  CE  + +++ +++L   KK 
Sbjct: 485 RHQRMMRHNQYRELLGLRDSLDFSSNMEDSHATQNLRLSTCELTKSLRNFSKELPFIKKG 544

Query: 277 -KELWV-LFFY 303
             E  + LFFY
Sbjct: 545 HAETQINLFFY 555


>SB_18906| Best HMM Match : LSM (HMM E-Value=3.2e-15)
          Length = 443

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKK 276
           N +V +  +++R  +   KAFD+H N++L + +E      K+ K + + K
Sbjct: 29  NTQVLINCRNNRKLLARVKAFDRHCNMVLENVKEMWTETPKSGKGKKKAK 78


>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 813

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 64  YLPNHSDKMTIGKNNKMQQHINY--RVRVILQDSR 162
           ++P H+  M IGK  +M + I +  RVR I+  SR
Sbjct: 334 FIPEHAMGMVIGKKGRMLEEIKHKTRVRPIIDKSR 368


>SB_18527| Best HMM Match : LSM (HMM E-Value=1.3)
          Length = 198

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 175 TFKAFDKHMNLILGDCEEFRKIKSKNRK 258
           T   FD++MNL+L + EE   +K+K RK
Sbjct: 121 TTHGFDEYMNLVLDEAEEVH-LKTKTRK 147


>SB_49489| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 485

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 118 VASYCFCRSSFYRSD*EDITRYLESFNLLQRYSLDSC 8
           V ++ FC  SF RSD  ++ R+L +    +R+  D C
Sbjct: 373 VCNWLFCGKSFTRSD--ELQRHLRTHTGEKRFQCDEC 407


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,098,087
Number of Sequences: 59808
Number of extensions: 257036
Number of successful extensions: 638
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)