Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30266
(685 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein. 100 4e-21
X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein. 100 4e-21
X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gen... 100 4e-21
J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein. 100 4e-21
CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein. 100 4e-21
BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear ribonucle... 100 4e-21
BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein. 100 4e-21
AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear ribonucle... 100 4e-21
AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear ribonucle... 100 4e-21
AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear ribonucle... 100 4e-21
AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear ribonucle... 100 4e-21
X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 ge... 100 6e-21
U41303-1|AAA98969.1| 240|Homo sapiens small nuclear ribonuleopr... 100 6e-21
J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus aut... 100 6e-21
CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein. 100 6e-21
BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear ribonucle... 100 6e-21
BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein. 100 6e-21
BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear ribonucle... 100 6e-21
BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein. 100 6e-21
AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear ribonucle... 100 6e-21
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 100 1e-20
AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear ribonucle... 99 2e-20
M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small nuc... 90 6e-18
M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small nuc... 90 6e-18
BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for MG... 87 7e-17
AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear ribonucl... 87 7e-17
X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antige... 67 5e-11
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 39 0.014
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.014
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 39 0.014
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 39 0.014
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 39 0.014
BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein. 37 0.058
BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein. 37 0.058
BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1... 37 0.058
BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein. 37 0.058
AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate immuno... 37 0.058
CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein. 36 0.18
BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small ... 36 0.18
AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein. 36 0.18
AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein. 36 0.18
AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated Sm-... 36 0.18
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 33 0.72
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 33 0.72
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 33 0.72
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 31 3.8
BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisia... 31 3.8
AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens ... 31 3.8
AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein. 31 3.8
AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin pr... 31 3.8
AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin pr... 31 3.8
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 31 3.8
AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein prot... 31 3.8
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 31 3.8
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 31 5.0
U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein. 31 5.0
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 31 5.0
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 31 5.0
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 31 5.0
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 31 5.0
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 31 5.0
BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear ribonucle... 31 5.0
BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear ribonucle... 31 5.0
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 31 5.0
AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein. 31 5.0
AJ227743-1|CAA12721.1| 75|Homo sapiens immunoglobulin heavy ch... 30 8.8
>X17568-1|CAB57868.1| 240|Homo sapiens snRNP B' protein protein.
Length = 240
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>X17567-1|CAB57867.1| 231|Homo sapiens snRNP B protein protein.
Length = 231
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>X15893-1|CAA33902.1| 231|Homo sapiens protein ( Human B cod gene
for B/B' snRNP associated protein. ).
Length = 231
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>J04564-1|AAA60151.1| 285|Homo sapiens SNRPB protein.
Length = 285
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>CR456969-1|CAG33250.1| 240|Homo sapiens SNRPB protein.
Length = 240
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>BC080516-1|AAH80516.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>BC003530-1|AAH03530.1| 234|Homo sapiens SNRPB protein protein.
Length = 234
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>AL049650-8|CAB46715.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 240
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>AL049650-7|CAB46714.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptides B and B1 protein.
Length = 231
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>AF134825-2|AAD54488.1| 234|Homo sapiens small nuclear
ribonucleoprotein B protein.
Length = 234
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>AF134825-1|AAD54489.1| 243|Homo sapiens small nuclear
ribonucleoprotein B' protein.
Length = 243
Score = 100 bits (240), Expect = 4e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQAEREEKRVLGLVLLRGENLVSMTV 82
>X15892-1|CAA33901.1| 240|Homo sapiens protein ( Human hcerN3 gene
mRNA for N snRNP associated protein. ).
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>U41303-1|AAA98969.1| 240|Homo sapiens small nuclear
ribonuleoprotein particle N protein.
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>J04615-1|AAA36617.1| 240|Homo sapiens protein ( Human lupus
autoantigen (small nuclear ribonuclepoprotein, snRNP,
SM-D) mRNA, complete cds. ).
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>CR450350-1|CAG29346.1| 240|Homo sapiens SNRPN protein.
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>BC025178-1|AAH25178.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>BC024777-1|AAH24777.1| 240|Homo sapiens SNURF protein protein.
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>BC003180-1|AAH03180.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>BC000611-1|AAH00611.1| 240|Homo sapiens SNRPN protein protein.
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>AF400432-1|AAK92481.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N protein.
Length = 240
Score = 100 bits (239), Expect = 6e-21
Identities = 48/77 (62%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 99.5 bits (237), Expect = 1e-20
Identities = 47/77 (61%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN-RKLQ 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN + +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 42.3 bits (95), Expect = 0.002
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = +3
Query: 261 ADREEKRTLGFVLLRGENIVSLTI 332
A+REEKR LG VLLRGEN+VS+T+
Sbjct: 59 AEREEKRVLGLVLLRGENLVSMTV 82
>AK222633-1|BAD96353.1| 240|Homo sapiens small nuclear
ribonucleoprotein polypeptide N variant protein.
Length = 240
Score = 98.7 bits (235), Expect = 2e-20
Identities = 48/77 (62%), Positives = 59/77 (76%), Gaps = 1/77 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-Q 264
MT+GK++KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC EFRKIK KN K +
Sbjct: 1 MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPE 60
Query: 265 TEKKKELWVLFFYVEKI 315
E+K+ L ++ E +
Sbjct: 61 REEKRVLGLVLLRGENL 77
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 57 KQPEREEKRVLGLVLLRGENLVSMTV 82
>M34082-1|AAA36579.1| 233|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB' mRNA, 3' end. ).
Length = 233
Score = 90.2 bits (214), Expect = 6e-18
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQTEKKKEL 285
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K + E+K+ L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 286 WVLFFYVEKI 315
++ E +
Sbjct: 61 GLVLLRGENL 70
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 50 KQAEREEKRVLGLVLLRGENLVSMTV 75
>M34081-1|AAA36578.1| 224|Homo sapiens protein ( Human small
nuclear ribonucleoprotein particle SmB mRNA, 3' end. ).
Length = 224
Score = 90.2 bits (214), Expect = 6e-18
Identities = 44/70 (62%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK-LQTEKKKEL 285
KM QHI+YR+R ILQD R FIGTFKAFDKHMNLIL DC+EFRKIK KN K + E+K+ L
Sbjct: 1 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVL 60
Query: 286 WVLFFYVEKI 315
++ E +
Sbjct: 61 GLVLLRGENL 70
Score = 44.0 bits (99), Expect = 5e-04
Identities = 19/26 (73%), Positives = 23/26 (88%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K A+REEKR LG VLLRGEN+VS+T+
Sbjct: 50 KQAEREEKRVLGLVLLRGENLVSMTV 75
>BC065369-1|AAH65369.1| 208|Homo sapiens Unknown (protein for
MGC:71285) protein.
Length = 208
Score = 86.6 bits (205), Expect = 7e-17
Identities = 38/66 (57%), Positives = 51/66 (77%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQT 267
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 268 EKKKEL 285
++K +
Sbjct: 101 REEKRV 106
>AL513477-10|CAI22612.3| 208|Homo sapiens small nuclear
ribonucleoprotein N (SNRPN) pseudogene protein.
Length = 208
Score = 86.6 bits (205), Expect = 7e-17
Identities = 38/66 (57%), Positives = 51/66 (77%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQT 267
+T+GK++KM H ++R+R ILQD R FIGTFKAFDKHMN+I DC+EFRK+K KN K
Sbjct: 41 VTVGKSSKMLPHTDHRMRRILQDGRVFIGTFKAFDKHMNMIPCDCDEFRKMKLKNAKQPA 100
Query: 268 EKKKEL 285
++K +
Sbjct: 101 REEKRV 106
>X16163-1|CAA34288.1| 218|Homo sapiens SmB /B' autoimmune antigene
protein.
Length = 218
Score = 67.3 bits (157), Expect = 5e-11
Identities = 33/55 (60%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = +1
Query: 154 DSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL-QTEKKKELWVLFFYVEKI 315
D R FIGTFKAFDKHMNLIL DC+EFRKIK KN K + E+K+ L ++ E +
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENL 55
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +3
Query: 255 KTADREEKRTLGFVLLRGENIVSLTI 332
K +REEKR LG VLLRGEN+VS+T+
Sbjct: 35 KQPEREEKRVLGLVLLRGENLVSMTV 60
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 39.1 bits (87), Expect = 0.014
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.014
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.014
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.014
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 39.1 bits (87), Expect = 0.014
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ +IN V VI D R +GT K FD+ +NLIL + E
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 43
>BC059944-1|AAH59944.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.058
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 237
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>BC051846-1|AAH51846.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.058
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 237
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>BC033861-1|AAH33861.1| 173|Homo sapiens LSM domain containing 1
protein.
Length = 173
Score = 37.1 bits (82), Expect = 0.058
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 237
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 92 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 134
>BC006407-1|AAH06407.1| 125|Homo sapiens LSMD1 protein protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.058
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 237
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>AF530060-1|AAQ09944.1| 125|Homo sapiens phosphonoformate
immuno-associated protein 2 protein.
Length = 125
Score = 37.1 bits (82), Expect = 0.058
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 109 KMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRK 237
+++ +N +R+ + D RT +G F D+ N+ILG +EF K
Sbjct: 44 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLK 86
>CR457185-1|CAG33466.1| 102|Homo sapiens LSM3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.18
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC007055-1|AAH07055.1| 102|Homo sapiens LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.18
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AJ238095-1|CAB45866.1| 102|Homo sapiens Lsm3 protein protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.18
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182418-1|AAG14954.1| 102|Homo sapiens MDS017 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.18
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>AF182289-1|AAD56227.1| 102|Homo sapiens U6 snRNA-associated
Sm-like protein LSm3 protein.
Length = 102
Score = 35.5 bits (78), Expect = 0.18
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ R+ V +++ R G A+D+H+N+ILGD EE
Sbjct: 25 LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 59
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 33.5 bits (73), Expect = 0.72
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL 261
I R+ ++++ + +GT FD +N++L D EF +I + R++
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRI 66
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 33.5 bits (73), Expect = 0.72
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL 261
I R+ ++++ + +GT FD +N++L D EF +I + R++
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRI 66
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 33.5 bits (73), Expect = 0.72
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKL 261
I R+ ++++ + +GT FD +N++L D EF +I + R++
Sbjct: 22 IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEF-EITPEGRRI 66
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 31.1 bits (67), Expect = 3.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
+ ++I+ +RV Q R G K FD +NL+L E+ + KL TE ++L
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKL-TEDTRQL 71
>BC012430-1|AAH12430.1| 360|Homo sapiens SEH1-like (S. cerevisiae)
protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 222
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AK056940-1|BAB71317.1| 421|Homo sapiens protein ( Homo sapiens
cDNA FLJ32378 fis, clone SKMUS1000022, weakly similar to
NUCLEAR PORE PROTEIN SEH1 HOMOLOG. ).
Length = 421
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 222
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF514996-1|AAM76707.1| 360|Homo sapiens nucleoporin Seh1 protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 222
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF431970-1|AAM44214.1| 421|Homo sapiens putative nucleoporin
protein SEH1B protein.
Length = 421
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 222
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF255625-1|AAM21169.1| 360|Homo sapiens putative nucleoporin
protein SEH1A protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 222
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 31.1 bits (67), Expect = 3.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
+ ++I+ +RV Q R G K FD +NL+L E+ + KL TE ++L
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKL-TEDTRQL 71
>AF136976-1|AAG49437.1| 360|Homo sapiens sec13-like protein
protein.
Length = 360
Score = 31.1 bits (67), Expect = 3.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDC 222
N+K++ ++ R L DSRT + K KHM L+L C
Sbjct: 94 NDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATC 133
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 31.1 bits (67), Expect = 3.8
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
+ ++I+ +RV Q R G K FD +NL+L E+ + KL TE ++L
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKL-TEDTRQL 71
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q +V + Q + G FD++MNL+L D EE K+K+RK
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRK 72
>U15008-1|AAC13776.1| 118|Homo sapiens Sm D2 protein.
Length = 118
Score = 30.7 bits (66), Expect = 5.0
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKK 276
N +V + ++++ +G KAFD+H N++L + +E K+ K + + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q +V + Q + G FD++MNL+L D EE K+K+RK
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRK 72
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q +V + Q + G FD++MNL+L D EE K+K+RK
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRK 72
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q +V + Q + G FD++MNL+L D EE K+K+RK
Sbjct: 14 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRK 61
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q +V + Q + G FD++MNL+L D EE K+K+RK
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRK 72
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q +V + Q + G FD++MNL+L D EE K+K+RK
Sbjct: 25 LQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRK 72
>BC001930-1|AAH01930.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.7 bits (66), Expect = 5.0
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKK 276
N +V + ++++ +G KAFD+H N++L + +E K+ K + + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>BC000486-1|AAH00486.1| 118|Homo sapiens small nuclear
ribonucleoprotein D2 polypeptide 16.5kDa protein.
Length = 118
Score = 30.7 bits (66), Expect = 5.0
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKK 276
N +V + ++++ +G KAFD+H N++L + +E K+ K + + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 30.7 bits (66), Expect = 5.0
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q +V + Q + G FD++MNL+L D EE K+K+RK
Sbjct: 25 LQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHS-KTKSRK 72
>AC007191-2|AAD22673.1| 118|Homo sapiens SMD2_HUMAN protein.
Length = 118
Score = 30.7 bits (66), Expect = 5.0
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKK 276
N +V + ++++ +G KAFD+H N++L + +E K+ K + + K
Sbjct: 39 NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSK 88
>AJ227743-1|CAA12721.1| 75|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 75
Score = 29.9 bits (64), Expect = 8.8
Identities = 19/40 (47%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +3
Query: 558 WVASSRNDGSSSWHG-SLWAR-TGSSRNATLLV*VQCSDL 671
WVAS +DGS++W+G S+ R T SS N+ V +Q S L
Sbjct: 24 WVASIASDGSNTWYGDSVKGRFTISSDNSRNTVYLQMSGL 63
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,869,469
Number of Sequences: 237096
Number of extensions: 1271076
Number of successful extensions: 3355
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 3222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3355
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7783251346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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