Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30266
(685 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associa... 83 2e-16
At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associa... 82 3e-16
At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associa... 82 3e-16
At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putati... 38 0.008
At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putati... 37 0.011
At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related... 35 0.058
At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putati... 33 0.18
At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putati... 33 0.18
At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2, put... 31 0.54
At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2, put... 31 0.54
At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2, put... 31 0.54
At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2, put... 31 0.54
At1g77770.2 68414.m09056 expressed protein 31 0.54
At1g77770.1 68414.m09055 expressed protein 31 0.54
At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G, puta... 31 0.71
At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E, puta... 30 1.2
At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putati... 30 1.2
At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G, puta... 29 2.2
At1g68140.1 68414.m07783 expressed protein 29 3.8
At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E, puta... 28 5.0
At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR ... 27 8.8
>At5g44500.1 68418.m05452 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|P27048 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Mus musculus}
Length = 254
Score = 82.6 bits (195), Expect = 2e-16
Identities = 37/66 (56%), Positives = 50/66 (75%), Gaps = 1/66 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNRKLQ 264
M++ K++KM Q INYR+RV +QD R IG F AFD+HMNL+LGDCEEFRK+ +K K
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKT 60
Query: 265 TEKKKE 282
E+++E
Sbjct: 61 NEEREE 66
Score = 39.1 bits (87), Expect = 0.003
Identities = 15/23 (65%), Positives = 21/23 (91%)
Frame = +3
Query: 264 DREEKRTLGFVLLRGENIVSLTI 332
+REE+RTLG VLLRGE ++S+T+
Sbjct: 63 EREERRTLGLVLLRGEEVISMTV 85
>At4g20440.2 68417.m02983 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 82.2 bits (194), Expect = 3e-16
Identities = 35/64 (54%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNRKLQ 264
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ +K +K+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 265 TEKK 276
E++
Sbjct: 61 EERE 64
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = +3
Query: 264 DREEKRTLGFVLLRGENIVSLTI 332
+RE++RTLG VLLRGE ++S+T+
Sbjct: 62 EREDRRTLGLVLLRGEEVISMTV 84
>At4g20440.1 68417.m02982 small nuclear ribonucleoprotein associated
protein B, putative / snRNP-B, putative / Sm protein B,
putative similar to SP|Q05856 Small nuclear
ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) {Drosophila melanogaster}
Length = 257
Score = 82.2 bits (194), Expect = 3e-16
Identities = 35/64 (54%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Frame = +1
Query: 88 MTIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-KSKNRKLQ 264
M++ K++KM Q INYR+RV +QD R +G F AFD+HMNL+LGDCEEFRK+ +K +K+
Sbjct: 1 MSMSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKIN 60
Query: 265 TEKK 276
E++
Sbjct: 61 EERE 64
Score = 37.9 bits (84), Expect = 0.006
Identities = 14/23 (60%), Positives = 21/23 (91%)
Frame = +3
Query: 264 DREEKRTLGFVLLRGENIVSLTI 332
+RE++RTLG VLLRGE ++S+T+
Sbjct: 62 EREDRRTLGLVLLRGEEVISMTV 84
>At1g21190.1 68414.m02649 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 97
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
I R+ V L+ R G AFD+H+N+ILGD EE
Sbjct: 20 IEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>At1g76860.1 68414.m08944 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to
SWISS-PROT:Q9Y4Z1 U6 snRNA-associated Sm-like protein
LSm3 (MDS017) [Mouse]
Length = 98
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
++ R+ V L+ R G AFD+H+N+ILGD EE
Sbjct: 20 LDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEE 54
>At4g18372.1 68417.m02725 small nuclear ribonucleoprotein-related /
snRNP-related contains similarity to snRNP-associated
polypeptide N [Rattus norvegicus] GP|206694|gb|AAA42059
Length = 112
Score = 34.7 bits (76), Expect = 0.058
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +1
Query: 106 NKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 243
+++++ + ++ V ++D R F+G F DK N+IL D E+R I+
Sbjct: 25 SRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIR 70
>At3g14080.2 68416.m01780 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCE 225
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g14080.1 68416.m01779 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm1 (Small nuclear
ribonuclear CaSm, Cancer-associated Sm-like) [Homo
sapiens] SWISS-PROT:O15116; contains Pfam profile:
PF01423 Sm protein
Length = 128
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +1
Query: 103 NNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLIL-GDCE 225
+ + +++ ++ V+L+D R +GT ++FD+ N +L G CE
Sbjct: 12 STSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACE 53
>At3g62840.1 68416.m07060 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
N +V + +++R +G +AFD+H N++L E R++ ++ K KKK L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.3 68415.m05946 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
N +V + +++R +G +AFD+H N++L E R++ ++ K KKK L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.2 68415.m05945 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 108
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
N +V + +++R +G +AFD+H N++L E R++ ++ K KKK L
Sbjct: 33 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 82
>At2g47640.1 68415.m05944 small nuclear ribonucleoprotein D2,
putative / snRNP core protein D2, putative / Sm protein
D2, putative similar to small nuclear ribonucleoprotein
Sm D2 (snRNP core protein D2) (Sm-D2) [Mus musculus]
SWISS-PROT:P43330
Length = 109
Score = 31.5 bits (68), Expect = 0.54
Identities = 17/53 (32%), Positives = 31/53 (58%)
Frame = +1
Query: 127 NYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRKLQTEKKKEL 285
N +V + +++R +G +AFD+H N++L E R++ ++ K KKK L
Sbjct: 34 NTQVLINCRNNRKLLGRVRAFDRHCNMVL---ENVREMWTEVPKTGKGKKKAL 83
>At1g77770.2 68414.m09056 expressed protein
Length = 264
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 91 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 201
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At1g77770.1 68414.m09055 expressed protein
Length = 265
Score = 31.5 bits (68), Expect = 0.54
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +1
Query: 91 TIGKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHM 201
T+ K+ +M H N + R +QD+ +F+G F+ KHM
Sbjct: 98 TVVKDARM--HFNSKRRTCMQDNCSFLGNFRKLKKHM 132
>At3g11500.1 68416.m01402 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to SWISS-PROT:Q15357 small nuclear
ribonucleoprotein G (snRNP-G, Sm protein G, Sm-G, SmG)
[Homo sapiens]
Length = 79
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/44 (25%), Positives = 29/44 (65%)
Frame = +1
Query: 97 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
G+ ++++++ ++++ L +R +GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE 48
>At4g30330.1 68417.m04311 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q ++ + Q G FD++MNL+L + EE IK K RK
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIKKKTRK 68
>At1g65700.1 68414.m07457 small nuclear ribonucleoprotein, putative
/ snRNP, putative / Sm protein, putative similar to U6
snRNA-associated Sm-like protein LSm8 [Homo sapiens]
SWISS-PROT:O95777
Length = 98
Score = 30.3 bits (65), Expect = 1.2
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 136 VRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
+ VI D R +G K FD+ N+IL + E
Sbjct: 15 ISVITNDGRNIVGVLKGFDQATNIILDESHE 45
>At2g23930.1 68415.m02857 small nuclear ribonucleoprotein G,
putative / snRNP-G, putative / Sm protein G, putative
similar to small nuclear ribonucleoprotein G (snRNP-G,
Sm protein G, Sm-G, SmG) [Homo sapiens]
SWISS-PROT:Q15357
Length = 80
Score = 29.5 bits (63), Expect = 2.2
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +1
Query: 97 GKNNKMQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEE 228
G+ ++++++ ++++ L +R GT + FD+ MNL++ + E
Sbjct: 5 GQPPDLKKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE 48
>At1g68140.1 68414.m07783 expressed protein
Length = 334
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 124 INYRVRVILQDSRTFIGTFKAFDKHMNL 207
+N + R+ +Q++ + GTFK KHM +
Sbjct: 140 LNLKKRICMQENCVYAGTFKELRKHMKV 167
>At2g18740.1 68415.m02182 small nuclear ribonucleoprotein E,
putative / snRNP-E, putative / Sm protein E, putative
similar to SWISS-PROT:P08578 small nuclear
ribonucleoprotein E (snRNP-E) (Sm protein E, Sm-E, SmE)
[Chicken]
Length = 88
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 112 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNRK 258
+Q ++ + Q G FD++MNL+L + EE IK RK
Sbjct: 21 LQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEV-SIKKNTRK 68
>At1g61190.1 68414.m06895 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 967
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/13 (76%), Positives = 12/13 (92%)
Frame = -2
Query: 312 FLHVKEQNPKFFF 274
FL+VK QNP+FFF
Sbjct: 895 FLNVKNQNPRFFF 907
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,374,301
Number of Sequences: 28952
Number of extensions: 180993
Number of successful extensions: 567
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -