Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30265X
(502 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 119 2e-28
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 62 3e-11
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 56 2e-09
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 53 2e-08
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 46 4e-06
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 26 2.8
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||... 26 2.8
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 26 3.7
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 119 bits (287), Expect = 2e-28
Identities = 51/77 (66%), Positives = 64/77 (83%)
Frame = -3
Query: 491 YFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAV 312
YF QAA KGIGEYV+ R+GMPCHLH TS+L+GLG PDYV+YHEL +T++EYM+ VT+V
Sbjct: 1036 YFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELVLTSKEYMNIVTSV 1095
Query: 311 DARWLAELGPMFFSVKE 261
D WLAE G +++SVKE
Sbjct: 1096 DPYWLAEFGGVYYSVKE 1112
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 62.5 bits (145), Expect = 3e-11
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = -3
Query: 491 YFQQAARLKGI-GEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTA 315
YF A+ G Y P ++HP+ LFG ++V+YHEL T++EYMH V+
Sbjct: 1057 YFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAA--EWVIYHELIQTSKEYMHTVST 1114
Query: 314 VDARWLAELGPMFF 273
V+ +WL E+ P FF
Sbjct: 1115 VNPKWLVEVAPTFF 1128
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 56.4 bits (130), Expect = 2e-09
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = -3
Query: 491 YFQQAARLKGIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTA 315
+F Q A+ G+ YV + LHP+ GL +P++VVY+E +T + ++ VTA
Sbjct: 634 FFMQVAKKSANGKNYVTMKDNQVVSLHPSC---GLSVTPEWVVYNEFVLTTKSFIRNVTA 690
Query: 314 VDARWLAELGPMFFSVKETGNRIETSVKKQR 222
+ WL EL P ++ + + N E Q+
Sbjct: 691 IRPEWLIELAPNYYDLDDFDNNKEVKSALQK 721
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 53.2 bits (122), Expect = 2e-08
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = -3
Query: 491 YFQQAARLKGIGE-YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTA 315
YF AARL G+ Y ++ ++HP+S++ P ++Y EL +T +EY +T
Sbjct: 967 YFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEK--KPKVIIYFELVLTTKEYCRQITE 1024
Query: 314 VDARWLAELGPMFFSVKETGNRIETSVKKQR 222
+ WL E+ P +F + +T + +R
Sbjct: 1025 IQPEWLLEISPHYFKPENIEELQKTQKRHKR 1055
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 45.6 bits (103), Expect = 4e-06
Identities = 22/78 (28%), Positives = 38/78 (48%)
Frame = -3
Query: 491 YFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAV 312
Y A L G Y +HP+S+LFG + ++YHEL T + Y+ V+++
Sbjct: 644 YITNTALLHPDGSYRTIIGNQTISIHPSSSLFGK--KVEAIMYHELVFTTKSYVRGVSSI 701
Query: 311 DARWLAELGPMFFSVKET 258
+ WL + P + + + T
Sbjct: 702 RSNWLNAVAPHYLARRST 719
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 488 FQQAARLKGIGEYVNCRTGMPCHLHPTSA 402
FQ R+KG Y + P H HPT+A
Sbjct: 35 FQIQLRIKGYAVYHHGFLSSPSHKHPTTA 63
>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 252
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 419 LHPTSALFGLGCSPDYVVYHELTMTAREYMHCV 321
LHP FGL C ++ + A+ Y+HCV
Sbjct: 119 LHPVG--FGLACHLGVLLNLPVVGVAKNYLHCV 149
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 260 TGNRIETSVKKQRSTSNA 207
TGN +ETS + R T+NA
Sbjct: 31 TGNEVETSAQLSRDTANA 48
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,428,165
Number of Sequences: 5004
Number of extensions: 22309
Number of successful extensions: 71
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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