Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30265X
(502 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 138 2e-33
SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 5e-05
SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 7e-05
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 40 9e-04
SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10) 29 2.8
SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2) 29 2.8
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 5.0
SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46) 28 5.0
SB_57560| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
>SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14)
Length = 1197
Score = 138 bits (334), Expect = 2e-33
Identities = 62/88 (70%), Positives = 71/88 (80%), Gaps = 1/88 (1%)
Frame = -3
Query: 473 RLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLA 294
R KGIGEYVN RTGMPCHLHPTSALFG+G +PDY+VYHEL MT++EYM CVTAVD WLA
Sbjct: 1058 RRKGIGEYVNMRTGMPCHLHPTSALFGMGYTPDYIVYHELVMTSKEYMQCVTAVDGNWLA 1117
Query: 293 ELGPMFFSVKE-TGNRIETSVKKQRSTS 213
ELGPMF+SVKE T +R E + + S
Sbjct: 1118 ELGPMFYSVKESTRSRAENRRRAKEEMS 1145
>SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 49.6 bits (113), Expect = 1e-06
Identities = 28/72 (38%), Positives = 37/72 (51%)
Frame = -3
Query: 488 FQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVD 309
F +A L+ G Y +HP+S+LF P YVVY+EL T++ YM V+ V
Sbjct: 613 FMNSAELQLDGTYQTLNHRETVAIHPSSSLFM--SKPAYVVYNELVHTSKCYMRDVSVVS 670
Query: 308 ARWLAELGPMFF 273
WL E P FF
Sbjct: 671 CDWLLEAAPGFF 682
>SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1303
Score = 44.4 bits (100), Expect = 5e-05
Identities = 23/60 (38%), Positives = 33/60 (55%)
Frame = -3
Query: 491 YFQQAARLKGIGEYVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAV 312
+F+ AAR Y ++HP+SALF P++VVYHEL +T +EYM V +
Sbjct: 856 FFRNAARKDPQEGYRTVVDNQVVYIHPSSALFNR--QPEWVVYHELVLTTKEYMREVVVM 913
>SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1168
Score = 44.0 bits (99), Expect = 7e-05
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = -3
Query: 452 YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAELGP 282
Y+ P +HP SALF + P YVVY E+ T++ ++ VT ++ WL L P
Sbjct: 958 YICTAVEEPVFIHPKSALFSV--LPQYVVYQEVVETSKLFLKGVTTIEVEWLPVLVP 1012
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 40.3 bits (90), Expect = 9e-04
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = -3
Query: 452 YVNCRTGMPCHLHPTSALFGLGCSPDYVVYHELTMTAREYMHCVTAVDARWLAE 291
Y N G LHP+SA+ +G P ++VY + T ++++ VT ++ WL +
Sbjct: 1267 YKNLYDGEYVQLHPSSAINFIGTEPKFLVYEKTLRTTQDFIINVTPIEEAWLLD 1320
>SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 444
Score = 29.9 bits (64), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 273 EEHGPQLGQPARVHGGDAVHVLARRHGELVVHH 371
E+H QL +P G D++ AR HG VV H
Sbjct: 236 EKHLEQLSKPGVYGGNDSIVAFARNHGADVVIH 268
>SB_45563| Best HMM Match : TMS_TDE (HMM E-Value=2.2e-10)
Length = 246
Score = 28.7 bits (61), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +2
Query: 368 PRSRGCSPARTAPRWGAGG 424
P + GCSP+R PR G GG
Sbjct: 130 PDTEGCSPSRPHPRQGDGG 148
>SB_33629| Best HMM Match : Extensin_2 (HMM E-Value=2.2)
Length = 958
Score = 28.7 bits (61), Expect = 2.8
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%)
Frame = +3
Query: 276 EHGPQLGQPARVHGGDAVHVLARRHGEL---VVHHVVGAAAQPEQRRGGVQVARHAGAAV 446
+HG Q A+ GG + A +HGE V H G Q + + G QV A A
Sbjct: 595 KHGEQEEDVAKHAGGKDLQEKAHKHGEHVEDVAKHAGGKDLQEKAHKHGEQVEDVAKQAG 654
Query: 447 HVLADALQPRRL 482
+ LQ R L
Sbjct: 655 YPYQKKLQKRTL 666
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 392 ARTAPRWGAGGTACRCGSSRTRR 460
A+ A GAG ACRC SR +R
Sbjct: 1067 AKEANEAGAGEKACRCAQSREKR 1089
>SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)
Length = 741
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -3
Query: 434 GMPCHLHPTSALFGLGCSP 378
G P H P SAL GLGC P
Sbjct: 487 GTPPHSRPRSALPGLGCYP 505
>SB_57560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 134
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -3
Query: 353 TMTAREYMHCVTAVDARWLAELGPMFFSVKETGNRIETSVKKQRSTS 213
T R Y + R LA+ P + +ET RIE S +K + S
Sbjct: 85 TPAVRHYRRYERPLRTRQLAQTLPKILAKRETNARIEASTRKDKILS 131
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,178,898
Number of Sequences: 59808
Number of extensions: 212299
Number of successful extensions: 608
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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