BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30264 (803 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 127 2e-30 SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.4 SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.4 SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.1 SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 26 5.5 SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 5.5 SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 7.2 SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 9.5 SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5 SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.5 >SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharomyces pombe|chr 1|||Manual Length = 704 Score = 127 bits (307), Expect = 2e-30 Identities = 60/85 (70%), Positives = 71/85 (83%) Frame = +3 Query: 255 RYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFM 434 RY+SL+DP LD+ K+L+I+I P+K L+I DTGIGMTK DL+NNLG IAKSGTK FM Sbjct: 47 RYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFM 106 Query: 435 EALQAGADISMIGQFGVGFYSSYLV 509 EA +GADISMIGQFGVGFYS+YLV Sbjct: 107 EAAASGADISMIGQFGVGFYSAYLV 131 Score = 91.1 bits (216), Expect = 2e-19 Identities = 47/88 (53%), Positives = 60/88 (68%), Gaps = 1/88 (1%) Frame = +2 Query: 503 LGADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEFMXXX 679 L AD+V V SKHNDDEQY+WESSAGGSFTV D+ P L RGT+I L +KED +++ Sbjct: 130 LVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEEK 189 Query: 680 XXXXXXXXXSQFIGYPIKLMVEKEREKD 763 S+FI YPI+L+V +E EK+ Sbjct: 190 TIKDTVKKHSEFISYPIQLVVTREVEKE 217 Score = 77.0 bits (181), Expect = 3e-15 Identities = 37/45 (82%), Positives = 41/45 (91%) Frame = +1 Query: 121 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 255 + ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKI Sbjct: 2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKI 46 >SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|Schizosaccharomyces pombe|chr 3|||Manual Length = 636 Score = 27.5 bits (58), Expect = 2.4 Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = -1 Query: 512 QHQVTGVEANTELSNHADVGTCLKSLHESFSTR-FRDGSQIVHQIG 378 Q Q+T +EA +LS+H + T L+ +H +F+ R + + I H IG Sbjct: 319 QLQITNLEALNKLSSHGE--TLLQIMHTAFTWRGTKLFNDIKHAIG 362 >SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 27.5 bits (58), Expect = 2.4 Identities = 20/53 (37%), Positives = 30/53 (56%) Frame = -2 Query: 430 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 272 KA++P F + +AL+ PI ++ I +F+ IL + S PLS FDGS Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534 >SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccharomyces pombe|chr 1|||Manual Length = 925 Score = 27.1 bits (57), Expect = 3.1 Identities = 10/27 (37%), Positives = 17/27 (62%) Frame = +2 Query: 494 LQLLGADRVTVHSKHNDDEQYVWESSA 574 L+L +D+V + HN YVW+S++ Sbjct: 315 LELKRSDKVPIECTHNFSVDYVWKSTS 341 >SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 683 Score = 26.2 bits (55), Expect = 5.5 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +2 Query: 503 LGADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGR 622 LG + + H + D E+ V ++ G + + G PLGR Sbjct: 512 LGVEYIKNHLSYADSEKMVALGASYGGYMINWIQGHPLGR 551 >SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 26.2 bits (55), Expect = 5.5 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -1 Query: 407 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 300 DG V I G +DDR+ L+ + NDL+V L Sbjct: 2 DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37 >SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosaccharomyces pombe|chr 2|||Manual Length = 376 Score = 25.8 bits (54), Expect = 7.2 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +2 Query: 269 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 397 H S K +R+ D + +ER H+ +R+R YD G F + + Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236 >SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 817 Score = 25.4 bits (53), Expect = 9.5 Identities = 8/29 (27%), Positives = 16/29 (55%) Frame = +2 Query: 311 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 397 +DH++++ H+ +Y YD R E + Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631 >SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Manual Length = 396 Score = 25.4 bits (53), Expect = 9.5 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = +1 Query: 166 MSLIINTFYSNKEIFLRELISNSSDALDKIGMNL 267 +S +++ + N E +LREL + D L K+G+ + Sbjct: 291 LSFLMDIGFENIEQYLRELGKSLVDELSKLGVTI 324 >SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3071 Score = 25.4 bits (53), Expect = 9.5 Identities = 12/43 (27%), Positives = 22/43 (51%) Frame = +3 Query: 273 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 401 DPSK ++Y K+ + + L D+GI ++ L+ +G Sbjct: 2472 DPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,298,582 Number of Sequences: 5004 Number of extensions: 73867 Number of successful extensions: 231 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 221 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 230 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 390427050 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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