Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30264
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 127 2e-30
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.4
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 27 2.4
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.1
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2... 26 5.5
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 5.5
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 26 7.2
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 9.5
SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr 3|||Ma... 25 9.5
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 9.5
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 127 bits (307), Expect = 2e-30
Identities = 60/85 (70%), Positives = 71/85 (83%)
Frame = +3
Query: 255 RYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFM 434
RY+SL+DP LD+ K+L+I+I P+K L+I DTGIGMTK DL+NNLG IAKSGTK FM
Sbjct: 47 RYQSLSDPHALDAEKDLFIRITPDKENKILSIRDTGIGMTKNDLINNLGVIAKSGTKQFM 106
Query: 435 EALQAGADISMIGQFGVGFYSSYLV 509
EA +GADISMIGQFGVGFYS+YLV
Sbjct: 107 EAAASGADISMIGQFGVGFYSAYLV 131
Score = 91.1 bits (216), Expect = 2e-19
Identities = 47/88 (53%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Frame = +2
Query: 503 LGADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEP-LGRGTKIVLHVKEDLAEFMXXX 679
L AD+V V SKHNDDEQY+WESSAGGSFTV D+ P L RGT+I L +KED +++
Sbjct: 130 LVADKVQVVSKHNDDEQYIWESSAGGSFTVTLDTDGPRLLRGTEIRLFMKEDQLQYLEEK 189
Query: 680 XXXXXXXXXSQFIGYPIKLMVEKEREKD 763
S+FI YPI+L+V +E EK+
Sbjct: 190 TIKDTVKKHSEFISYPIQLVVTREVEKE 217
Score = 77.0 bits (181), Expect = 3e-15
Identities = 37/45 (82%), Positives = 41/45 (91%)
Frame = +1
Query: 121 AEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 255
+ ETF F+AEI+QLMSLIINT YSNKEIFLRELISN+SDALDKI
Sbjct: 2 SNTETFKFEAEISQLMSLIINTVYSNKEIFLRELISNASDALDKI 46
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -1
Query: 512 QHQVTGVEANTELSNHADVGTCLKSLHESFSTR-FRDGSQIVHQIG 378
Q Q+T +EA +LS+H + T L+ +H +F+ R + + I H IG
Sbjct: 319 QLQITNLEALNKLSSHGE--TLLQIMHTAFTWRGTKLFNDIKHAIG 362
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 27.5 bits (58), Expect = 2.4
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = -2
Query: 430 KALVPDFAMVPKLFTKSALVIPIPVSMIVRVPSFLLGMILMYSSLPLSSFDGS 272
KA++P F + +AL+ PI ++ I +F+ IL + S PLS FDGS
Sbjct: 486 KAVIPIFTNQVS-YINNALIRPI-IAYINSTRTFI--PILCHVSKPLSDFDGS 534
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +2
Query: 494 LQLLGADRVTVHSKHNDDEQYVWESSA 574
L+L +D+V + HN YVW+S++
Sbjct: 315 LELKRSDKVPIECTHNFSVDYVWKSTS 341
>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 683
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 503 LGADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGR 622
LG + + H + D E+ V ++ G + + G PLGR
Sbjct: 512 LGVEYIKNHLSYADSEKMVALGASYGGYMINWIQGHPLGR 551
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 407 DGSQIVHQIGLGHTNTGIDDRKSALVLVGNDLDVQL 300
DG V I G +DDR+ L+ + NDL+V L
Sbjct: 2 DGKPQVEVIVNGQVVPNLDDREYRLIKLENDLEVLL 37
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 269 HGSVKTR*WQRAVHQDHSQ-QERGHSYDHRYRYWYDQGRFGEQF 397
H S K +R+ D + +ER H+ +R+R YD G F + +
Sbjct: 193 HSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSGYFKKHY 236
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 9.5
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +2
Query: 311 QDHSQQERGHSYDHRYRYWYDQGRFGEQF 397
+DH++++ H+ +Y YD R E +
Sbjct: 603 KDHTKEQAWHAMQQGIKYMYDNWRIWENY 631
>SPCC777.03c |||nifs homolog|Schizosaccharomyces pombe|chr
3|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +1
Query: 166 MSLIINTFYSNKEIFLRELISNSSDALDKIGMNL 267
+S +++ + N E +LREL + D L K+G+ +
Sbjct: 291 LSFLMDIGFENIEQYLRELGKSLVDELSKLGVTI 324
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = +3
Query: 273 DPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLG 401
DPSK ++Y K+ + + L D+GI ++ L+ +G
Sbjct: 2472 DPSKAVRKPKIYSKVSTEERDFNLEQFDSGIDLSVKFLLEGIG 2514
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,298,582
Number of Sequences: 5004
Number of extensions: 73867
Number of successful extensions: 231
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 230
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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