Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30264
         (803 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)                      119   3e-27
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    75   5e-14
SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)                       71   1e-12
SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)            29   3.3  
SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)                   29   3.3  
SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)                        29   3.3  
SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)             29   5.8  

>SB_22016| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 581

 Score =  119 bits (286), Expect = 3e-27
 Identities = 53/87 (60%), Positives = 68/87 (78%)
 Frame = +2

Query: 503 LGADRVTVHSKHNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXX 682
           L A++V V +KHNDDEQY+WES+AGGSFTV+ DSGEPLGRGTKIVL++KED  E++    
Sbjct: 79  LVAEKVVVTTKHNDDEQYIWESAAGGSFTVKRDSGEPLGRGTKIVLYLKEDQTEYLEEKR 138

Query: 683 XXXXXXXXSQFIGYPIKLMVEKEREKD 763
                   SQFIGYP+ L+V+KER+K+
Sbjct: 139 IKEIVKKHSQFIGYPLSLLVQKERDKE 165



 Score = 46.0 bits (104), Expect = 4e-05
 Identities = 20/22 (90%), Positives = 22/22 (100%)
 Frame = +3

Query: 444 QAGADISMIGQFGVGFYSSYLV 509
           +AGADISMIGQFGVGFYS+YLV
Sbjct: 59  KAGADISMIGQFGVGFYSAYLV 80


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 75.4 bits (177), Expect = 5e-14
 Identities = 41/88 (46%), Positives = 58/88 (65%), Gaps = 3/88 (3%)
 Frame = +3

Query: 255 RYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFM 434
           R+  LT     ++   L I I  ++  GT TI D G+GMT+ +L+++LG IAKSG+K FM
Sbjct: 102 RHFFLTGKDVSETETSLEIMIETDQEAGTFTIQDNGVGMTEEELMDHLGVIAKSGSKVFM 161

Query: 435 EALQAGADIS---MIGQFGVGFYSSYLV 509
           E L+  A  S   +IGQFGVGFYS+++V
Sbjct: 162 EKLKNEARSSHENIIGQFGVGFYSTFMV 189



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
 Frame = +2

Query: 509 ADRVTVHSK--HNDDEQYVWESSAGGSFTVRPDSGEPLGRGTKIVLHVKEDLAEFMXXXX 682
           AD+V V++K    + + Y W S   GS+     +G  + RGTK+VLH+KED   F     
Sbjct: 190 ADKVDVYTKSYQPNSQGYFWTSDGSGSYEYAEANG--VARGTKLVLHLKEDCKRFAMKTA 247

Query: 683 XXXXXXXXSQFIGYPIKL 736
                   S F+G+PI L
Sbjct: 248 VEDIVQRYSNFVGFPIYL 265



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 15/59 (25%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  AVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSN-KEIFLRELISNSSDALDKI 255
           +V+ + E  + +  E  +     ++ + + L++++  +   ++F+RE+ISN+SDAL+K+
Sbjct: 43  SVRLLSETTDDRSVEESSETSGEDVEEPLELLMSSQKTKLSQVFIREVISNASDALEKV 101


>SB_50934| Best HMM Match : HSP90 (HMM E-Value=0)
          Length = 855

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = +2

Query: 509 ADRVTVHSKHNDDEQYVWESSAGGSFTVRPD-SGEPLGRGTKIVLHVKEDLAEFMXXXXX 685
           ADRV V SK+NDD+QY+WES A  SF++  D  G  L RGT I LH+KE+  +++     
Sbjct: 176 ADRVIVTSKNNDDKQYIWESDA-SSFSISEDPRGPTLKRGTTISLHLKEEARDYLEPETI 234

Query: 686 XXXXXXXSQFIGYPIKLMVEKERE 757
                  SQFI +PI L   K  E
Sbjct: 235 KDLVKKYSQFINFPIFLWTSKTTE 258



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 35/58 (60%), Positives = 40/58 (68%)
 Frame = +3

Query: 255 RYESLTDPSKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKA 428
           R  SLTD +  DSG EL IKI  +K    L + DTGIGMTK +L+ NLGTIAKSGT A
Sbjct: 119 RLMSLTDKTAFDSGDELSIKIKADKENNILHVTDTGIGMTKEELIKNLGTIAKSGTIA 176



 Score = 65.7 bits (153), Expect = 4e-11
 Identities = 32/51 (62%), Positives = 39/51 (76%)
 Frame = +1

Query: 103 EMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKI 255
           +M+    + E   FQAE+ ++M LIIN+ Y NKEIFLRELISNSSDALDKI
Sbjct: 68  QMKELRDKAEKHEFQAEVNRMMKLIINSLYRNKEIFLRELISNSSDALDKI 118


>SB_51568| Best HMM Match : RNA_pol_Rpa2_4 (HMM E-Value=2.3)
          Length = 375

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +1

Query: 49  PSSHFV*IKQKAVKKMPEEMETQPAEVETFAFQAEIAQLMSLIINTFYSNKEIFLRELIS 228
           PS   V    KA  K  +E ET+P E+   +F+ +   ++        S+  +FLR  I 
Sbjct: 71  PSGSSVSESGKAKTKKEKEKETKPFEIALVSFEEDEFPMI-------LSDDSLFLRGFIQ 123

Query: 229 NSSDALDKI 255
             SDA +KI
Sbjct: 124 LRSDASEKI 132


>SB_23993| Best HMM Match : SRCR (HMM E-Value=0.0036)
          Length = 189

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 18/73 (24%), Positives = 31/73 (42%)
 Frame = +2

Query: 395 FGNHREIWY*SFHGGSSSRCRHQHDWTVRCWLLLQLLGADRVTVHSKHNDDEQYVWESSA 574
           +G+ REI   +    +   C H  D TV+C +  +++     T     ND E     +  
Sbjct: 20  YGSEREIASCNRSNWAQPTCNHSRDVTVQCKIRPEMIPKSTPTDPRTRNDCEASPKSTPR 79

Query: 575 GGSFTVRPDSGEP 613
             +  +  DSG+P
Sbjct: 80  NYNHRLVDDSGDP 92


>SB_11623| Best HMM Match : ABC1 (HMM E-Value=0)
          Length = 780

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
 Frame = +2

Query: 302 AVHQDHSQQERGHSYDHRYRYWYDQ----GRFGEQFGNHREIWY*SFHGGSSSRCRHQHD 469
           AV   H+   RGHS+      W       G F + FG+    W    + G+S  CR    
Sbjct: 150 AVGVPHAHSYRGHSFRRGATTWAFHLGIPGEFIQVFGD----WASDAYRGNSL-CRANCQ 204

Query: 470 WTVRCWLLLQLLGA 511
           W +RC ++ Q + A
Sbjct: 205 WLIRCVVIFQGVSA 218


>SB_45717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +3

Query: 279 SKLDSGKELYIKIIPNKNEGTLTIIDTGIGMTKADLVNNLGTIAKSGTKAFMEALQA 449
           +K+  G+E+   +  ++NE     ++  +G ++ D++ N+G      T++ +E  +A
Sbjct: 265 AKISDGQEIKFSVFIDENEYRSICLNLQVGPSEPDVLKNIGVTRMPETRSNVENCRA 321


>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
          Length = 1026

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 24/104 (23%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
 Frame = +3

Query: 378  ADLVNNL-GTIAKSGTKAFMEALQAGADISMIGQFGVGFYSSYLVLTA*LFTLNTMTTSN 554
            +D++  L G +     +A++ ++ AG +   +  FG  +Y ++  +   + TL+ MT   
Sbjct: 857  SDIMKTLRGHLLTPYVRAYLLSV-AGGEAKHLVSFG--YYRAFNSMLDNIRTLHGMTMKV 913

Query: 555  TCGNLLQEARSQSAQTAVSPL------VEVQRSSFTSKRTWQNS 668
              GN  +E +  +  TAV P+      ++ QR+   +++ ++NS
Sbjct: 914  AKGNRYKEIKKATGATAVYPIDLVKTRMQNQRAVLEAEKVYKNS 957


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,799,713
Number of Sequences: 59808
Number of extensions: 573445
Number of successful extensions: 1723
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1718
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2227723674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)