Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30263
         (604 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    86   3e-18
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    84   1e-17
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    74   1e-14
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.52 
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.7  

>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 86.2 bits (204), Expect = 3e-18
 Identities = 43/82 (52%), Positives = 54/82 (65%), Gaps = 1/82 (1%)
 Frame = +3

Query: 243 EITGTLKRRSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLA 419
           +I      + SA +KKRE+  KRAE Y  EYR  ER++I LAR+AR  GNY+VP E KL 
Sbjct: 32  QIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLI 91

Query: 420 FVIRIRGINQVSPKSVKFCNCL 485
           FV+RIRGIN + PK+ K    L
Sbjct: 92  FVVRIRGINNIPPKARKIMQLL 113



 Score = 42.3 bits (95), Expect = 5e-05
 Identities = 17/32 (53%), Positives = 24/32 (75%)
 Frame = +1

Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
           +FV+ NKA   ML++ EPY+ +G PN K+VRE
Sbjct: 122 IFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRE 153



 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 458 EVRKVLQLFRLRQINNG 508
           + RK++QL RL QINNG
Sbjct: 105 KARKIMQLLRLLQINNG 121


>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 84.2 bits (199), Expect = 1e-17
 Identities = 42/74 (56%), Positives = 51/74 (68%), Gaps = 1/74 (1%)
 Frame = +3

Query: 267 RSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGI 443
           + +A +KKRE+  KRAE Y  EYR  ER++I L R+AR  GNYYVP E KL FVIRIRGI
Sbjct: 41  KKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGI 100

Query: 444 NQVSPKSVKFCNCL 485
           N + PK+ K    L
Sbjct: 101 NNIPPKARKIMQLL 114



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 19/32 (59%), Positives = 26/32 (81%)
 Frame = +1

Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
           +FV+ NKAT  ML++ EPY+ +G PNLK+VRE
Sbjct: 123 VFVKFNKATKEMLQVVEPYVTYGIPNLKTVRE 154



 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +2

Query: 458 EVRKVLQLFRLRQINNG 508
           + RK++QL RL QINNG
Sbjct: 106 KARKIMQLLRLIQINNG 122


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 33/76 (43%), Positives = 49/76 (64%)
 Frame = +3

Query: 258 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 437
           + ++ +  K ++E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP E KL FVIRI 
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 438 GINQVSPKSVKFCNCL 485
           G+  + PK  K    L
Sbjct: 97  GVKNMPPKIRKVLRLL 112



 Score = 46.4 bits (105), Expect = 3e-06
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = +1

Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
           +FVR NKA   MLRI EPY+ +G PNL SVRE
Sbjct: 121 VFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRE 152



 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 458 EVRKVLQLFRLRQINN 505
           ++RKVL+L RL +INN
Sbjct: 104 KIRKVLRLLRLSRINN 119


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.52
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 273 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 389
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 306 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 407
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,051
Number of Sequences: 5004
Number of extensions: 39428
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)