Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30263
(604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 76 2e-14
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 73 2e-13
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 35 0.057
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 31 0.70
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537... 28 5.0
03_02_0651 + 10183050-10184167,10184350-10184974,10185023-101852... 27 8.7
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/76 (44%), Positives = 52/76 (68%)
Frame = +3
Query: 258 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIR 437
L + A++ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV EAKL FV+RIR
Sbjct: 34 LAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIR 93
Query: 438 GINQVSPKSVKFCNCL 485
GIN + PK+ K L
Sbjct: 94 GINAMHPKTRKILQLL 109
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/32 (68%), Positives = 29/32 (90%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKAT+NMLR EPY+A+G PNLKSVRE
Sbjct: 118 VFLKVNKATINMLRRVEPYVAYGYPNLKSVRE 149
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 458 EVRKVLQLFRLRQINNG 508
+ RK+LQL RLRQI NG
Sbjct: 101 KTRKILQLLRLRQIFNG 117
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/73 (43%), Positives = 50/73 (68%)
Frame = +3
Query: 267 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 446
+ +I+ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV E KL FV+RIRGIN
Sbjct: 36 KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95
Query: 447 QVSPKSVKFCNCL 485
+ PK+ K L
Sbjct: 96 AMHPKTRKILQLL 108
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/32 (68%), Positives = 29/32 (90%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKAT+NMLR EPY+A+G PNLKSVRE
Sbjct: 117 VFLKVNKATINMLRRVEPYVAYGYPNLKSVRE 148
Score = 27.9 bits (59), Expect = 6.5
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +2
Query: 458 EVRKVLQLFRLRQINNG 508
+ RK+LQL RLRQI NG
Sbjct: 100 KTRKILQLLRLRQIFNG 116
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 34.7 bits (76), Expect = 0.057
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F++ AT+ L + EP+I +G PNLK+V++
Sbjct: 120 VFLKATDATMKRLLVVEPFITYGFPNLKNVKD 151
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 31.1 bits (67), Expect = 0.70
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = +3
Query: 249 TGTLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 395
T TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 147 TETLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>02_05_0225 +
26951993-26952165,26953169-26953567,26953644-26953797,
26954069-26954240,26954494-26954567,26954667-26954763,
26954888-26955000,26955168-26955283,26955960-26956017,
26956512-26956664,26957377-26957460,26957579-26957734,
26958401-26958469,26959212-26959300,26959398-26959560,
26959740-26959874,26959950-26960055,26960143-26960237,
26960508-26960753,26961567-26961635,26961772-26961837,
26961838-26961983,26962348-26962449,26962752-26962899,
26964183-26964239,26964315-26964445,26964535-26964623,
26964694-26965007,26965084-26965176,26966504-26966578,
26966834-26966895,26967254-26967356,26967518-26967676,
26967790-26967930,26967981-26968084,26968146-26968260,
26969017-26969169,26969256-26969417
Length = 1646
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 343 SLMRYSLTYCSALLKISLFFLMAEERLFSVPV 248
S+ +SLT SA ++ L+ +AEE L S+PV
Sbjct: 109 SIFEFSLTLRSASPRLVLYRQLAEESLSSIPV 140
>03_02_0651 +
10183050-10184167,10184350-10184974,10185023-10185208,
10185325-10185660
Length = 754
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 379 IVATTTFPGKPNWHLSSESVVSTKFH 456
+V +P NWHLSS S + K H
Sbjct: 573 VVLNDLYPKCSNWHLSSTSYLQAKRH 598
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,458,299
Number of Sequences: 37544
Number of extensions: 256912
Number of successful extensions: 563
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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