Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30263
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)       93   1e-19
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_51900| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)                   28   5.1  
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)                    28   6.7  
SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)                 27   8.8  

>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
          Length = 245

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 44/67 (65%), Positives = 53/67 (79%)
 Frame = +3

Query: 285 KKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKS 464
           K++EIFKRAE+YVKEYR KE DE+R+ + A+  GN+YVP EA+LAFVIRIRGIN VSPK 
Sbjct: 43  KRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKV 102

Query: 465 VKFCNCL 485
            K    L
Sbjct: 103 RKILQLL 109



 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 26/32 (81%), Positives = 29/32 (90%)
 Frame = +1

Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
           +FVRLNKAT NMLRI +PYIA+G PNLKSVRE
Sbjct: 118 VFVRLNKATANMLRIVQPYIAFGYPNLKSVRE 149



 Score = 33.1 bits (72), Expect = 0.18
 Identities = 14/17 (82%), Positives = 16/17 (94%)
 Frame = +2

Query: 458 EVRKVLQLFRLRQINNG 508
           +VRK+LQL RLRQINNG
Sbjct: 101 KVRKILQLLRLRQINNG 117


>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +1

Query: 364 PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSATV*TAPNK 501
           PDK A+  TTT P   +   ++     T + R P  S T+ T P K
Sbjct: 363 PDKTAVPKTTTAPETTDASKTTVETQQTTYSRDPEISVTISTQPKK 408


>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 267 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 392
           R  AI ++RE+++R E Y +    + R+  R     R R  Y
Sbjct: 16  RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57


>SB_51900| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 249 TGTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE-AKLAFV 425
           TG L+ R   +K  R+ +        EY++   + I   R+ARN  N  +  + A++  +
Sbjct: 21  TGLLELRGKKLKITRDSWLNYALNYTEYQLLRPNNILYRRKARNNLNSQITRDYAEICGL 80

Query: 426 IRIRGINQVS 455
             +RG +Q++
Sbjct: 81  CGLRGKSQIT 90


>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 267 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 392
           R   + ++REI++R E Y +    + R+  RL    R R  Y
Sbjct: 27  RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68


>SB_12133| Best HMM Match : DUF827 (HMM E-Value=0.64)
          Length = 325

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 219 EERGSSH*EITGTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRG 386
           EE+ +   ++   L+ R   I+K       AE+ +K  R+KE D I    +  +RG
Sbjct: 210 EEKDAELQQLRQALRERDRLIEKINSAVMSAEEQLKVRRLKEDDSIDQLSRHEHRG 265


>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
          Length = 712

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 339 KERDEIRLARQARNRGNYYVP 401
           K RD   +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503


>SB_50714| Best HMM Match : TPR_2 (HMM E-Value=2.9e-15)
          Length = 458

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = +1

Query: 298 SSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRSP*SSA 477
           ++ G + TSR+T       S    K A   T +   +P+W L+S + VS    R+P S+ 
Sbjct: 165 TTNGPSKTSRSTDGEESAGSTHTKKPAKDDTDSSADEPDWDLTS-AFVSRAAGRNPTSTT 223

Query: 478 TV 483
           TV
Sbjct: 224 TV 225


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,951,696
Number of Sequences: 59808
Number of extensions: 316566
Number of successful extensions: 845
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)