Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30263
         (604 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...    80   1e-15
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical ...    28   5.9  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 35/63 (55%), Positives = 50/63 (79%)
 Frame = +3

Query: 282 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 461
           +KK + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 462 SVK 470
             K
Sbjct: 101 PRK 103



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 19/32 (59%), Positives = 27/32 (84%)
 Frame = +1

Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
           +FV+LNKAT+ +LRI EPY+AWG PN K++ +
Sbjct: 117 VFVKLNKATLPLLRIIEPYVAWGYPNNKTIHD 148



 Score = 29.1 bits (62), Expect = 2.6
 Identities = 12/15 (80%), Positives = 13/15 (86%)
 Frame = +2

Query: 464 RKVLQLFRLRQINNG 508
           RK LQ+ RLRQINNG
Sbjct: 102 RKALQILRLRQINNG 116


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 31.5 bits (68), Expect = 0.48
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = +1

Query: 283 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 462
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++  +
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRYASN 80

Query: 463 P*SSATV*TAP 495
             S   + + P
Sbjct: 81  RSSQVKIRSVP 91


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 383 WQLLRSRGSQIGICHPNPWYQPSFTEV-RKVLQLFRLRQINN 505
           +Q++R  G Q+GI    PW  P F++V R  L+  R  ++ N
Sbjct: 210 YQMVRELG-QLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>AF016430-4|AAB65372.1|  594|Caenorhabditis elegans Hypothetical
           protein C05C8.5 protein.
          Length = 594

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +3

Query: 480 CLDCAK*TMVVCTSE*GYCEY-ATYRRALHCLGI 578
           C DC++ T+V CT     C + +T  + +HC+ I
Sbjct: 415 CTDCSQPTVVACTVANCRCRFVSTPSKCVHCVKI 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,381,316
Number of Sequences: 27780
Number of extensions: 225315
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)