Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30263
(604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 80 1e-15
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 80 1e-15
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 78 5e-15
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 78 5e-15
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 78 5e-15
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 77 1e-14
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 51 7e-07
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 30 1.0
At3g52860.1 68416.m05825 expressed protein 29 1.8
At1g26540.1 68414.m03234 agenet domain-containing protein contai... 29 2.4
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 29 2.4
At5g06740.1 68418.m00762 lectin protein kinase family protein co... 27 7.2
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 27 9.6
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +3
Query: 267 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 446
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN
Sbjct: 39 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98
Query: 447 QVSPKSVKFCNCL 485
+ PK+ K L
Sbjct: 99 AIDPKTKKILQLL 111
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKATVNMLR EPY+ +G PNLKSV+E
Sbjct: 120 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKE 151
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 79.8 bits (188), Expect = 1e-15
Identities = 36/73 (49%), Positives = 51/73 (69%)
Frame = +3
Query: 267 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGIN 446
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN
Sbjct: 34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 447 QVSPKSVKFCNCL 485
+ PK+ K L
Sbjct: 94 AIDPKTKKILQLL 106
Score = 50.4 bits (115), Expect = 9e-07
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKATVNMLR EPY+ +G PNLKSV+E
Sbjct: 115 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKE 146
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 77.8 bits (183), Expect = 5e-15
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +3
Query: 282 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 461
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 462 SVKFCNCL 485
+ K L
Sbjct: 101 TKKILQLL 108
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKAT+NMLR EPY+ +G PNLKSV+E
Sbjct: 117 VFLKVNKATINMLRRVEPYVTYGYPNLKSVKE 148
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 77.8 bits (183), Expect = 5e-15
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +3
Query: 282 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 461
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 462 SVKFCNCL 485
+ K L
Sbjct: 101 TKKILQLL 108
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKAT+NMLR EPY+ +G PNLKSV+E
Sbjct: 117 VFLKVNKATINMLRRVEPYVTYGYPNLKSVKE 148
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 77.8 bits (183), Expect = 5e-15
Identities = 36/68 (52%), Positives = 50/68 (73%)
Frame = +3
Query: 282 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 461
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 462 SVKFCNCL 485
+ K L
Sbjct: 101 TKKILQLL 108
Score = 50.0 bits (114), Expect = 1e-06
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKAT+NMLR EPY+ +G PNLKSV+E
Sbjct: 117 VFLKVNKATINMLRRVEPYVTYGYPNLKSVKE 148
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 76.6 bits (180), Expect = 1e-14
Identities = 36/68 (52%), Positives = 48/68 (70%)
Frame = +3
Query: 282 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 461
+ ++ IFKRAEQY KEY KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK
Sbjct: 39 ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98
Query: 462 SVKFCNCL 485
+ K L
Sbjct: 99 TKKILQLL 106
Score = 49.2 bits (112), Expect = 2e-06
Identities = 20/32 (62%), Positives = 28/32 (87%)
Frame = +1
Query: 508 LFVRLNKATVNMLRIAEPYIAWG*PNLKSVRE 603
+F+++NKAT+NMLR EPY+ +G PNLKSV+E
Sbjct: 115 VFLKVNKATMNMLRRVEPYVTYGFPNLKSVKE 146
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 50.8 bits (116), Expect = 7e-07
Identities = 26/68 (38%), Positives = 40/68 (58%)
Frame = +3
Query: 282 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPK 461
KKK KR E +V E+R KE D IR+ ++ + + P ++ L F+IRI+G N + PK
Sbjct: 43 KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPK 102
Query: 462 SVKFCNCL 485
+ + N L
Sbjct: 103 TKRILNNL 110
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 237 H*EITGTLKRRSSAIKKKREIFKRAEQYVKEYRIK-ERDEIRLARQARN 380
H +I G + R + IKK + +K+A + ++EY K E E R+ ++
Sbjct: 281 HKQINGLFEEREATIKKLTDDYKQAREMLEEYMSKMEETERRMQETGKD 329
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 258 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 356
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At1g26540.1 68414.m03234 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 695
Score = 29.1 bits (62), Expect = 2.4
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = -1
Query: 526 YSDVQTTIVYLAQSKQLQNFTDFGETWLIPRIRMTNANLASPGT 395
Y D+ I+ + + + G TW+ P I +N ++ SPGT
Sbjct: 115 YFDLPPDIIQFERKQLRTHLIWTGGTWIQPEIEESNKSMFSPGT 158
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +1
Query: 307 GLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKFHRS 462
G + T R+ +R + SD K+ V+ T GK HLS E VS F RS
Sbjct: 407 GASVTPRSIKARRALLSD---KNEKVSVTERNGKLGTHLSDEISVSEGFRRS 455
>At5g06740.1 68418.m00762 lectin protein kinase family protein
contains Legume lectins beta-chain signature,
PROSITE:PS00307 and Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 652
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 413 IGICHPNPWYQPSFTEVRKVL 475
+ CHPNP +PS V KVL
Sbjct: 586 LACCHPNPNQRPSMKTVLKVL 606
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +3
Query: 261 KRRSSAIKKKREIFKRAEQYVKEYRIK 341
KR S IKK RE +RAE+ KE + K
Sbjct: 309 KRSSDEIKKLRENLERAEKETKELQKK 335
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,710,332
Number of Sequences: 28952
Number of extensions: 210592
Number of successful extensions: 536
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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