BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdV30262 (399 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 134 4e-33 SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 134 4e-33 SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 28 0.46 SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 0.81 SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 27 1.4 SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 1.4 SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 5.7 SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 24 10.0 SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 24 10.0 SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 24 10.0 SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 24 10.0 SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 24 10.0 SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 10.0 SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 10.0 >SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 134 bits (325), Expect = 4e-33 Identities = 65/85 (76%), Positives = 75/85 (88%) Frame = +1 Query: 1 IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180 IVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ Sbjct: 91 IVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAL 150 Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255 L+ GAREAAFRN+K+I+EC+A++ Sbjct: 151 ALITIGAREAAFRNVKSISECLAEE 175 Score = 57.2 bits (132), Expect = 9e-10 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = +3 Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338 +INAAKGSSNSYAIKKKDELERVAKSNR Sbjct: 176 IINAAKGSSNSYAIKKKDELERVAKSNR 203 >SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces pombe|chr 1|||Manual Length = 203 Score = 134 bits (325), Expect = 4e-33 Identities = 65/85 (76%), Positives = 75/85 (88%) Frame = +1 Query: 1 IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180 IVKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+ Sbjct: 91 IVKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQAL 150 Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255 L+ GAREAAFRN+K+I+EC+A++ Sbjct: 151 ALITIGAREAAFRNVKSISECLAEE 175 Score = 57.2 bits (132), Expect = 9e-10 Identities = 27/28 (96%), Positives = 28/28 (100%) Frame = +3 Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338 +INAAKGSSNSYAIKKKDELERVAKSNR Sbjct: 176 IINAAKGSSNSYAIKKKDELERVAKSNR 203 >SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schizosaccharomyces pombe|chr 1|||Manual Length = 259 Score = 28.3 bits (60), Expect = 0.46 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = +1 Query: 1 IVKHAFEIIHLLTGENPLQVLVTAIINSGP 90 IV A II TGENP+ VL AI P Sbjct: 145 IVATALSIIQKETGENPIDVLKQAIAEISP 174 >SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 335 Score = 27.5 bits (58), Expect = 0.81 Identities = 17/51 (33%), Positives = 28/51 (54%) Frame = +1 Query: 13 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 165 + +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207 >SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces pombe|chr 1|||Manual Length = 567 Score = 26.6 bits (56), Expect = 1.4 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = +1 Query: 265 QLRVHLTPTPSKRRTSWSVLLNPTV 339 Q ++H P P +RR S + L NP++ Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148 >SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosaccharomyces pombe|chr 2|||Manual Length = 933 Score = 26.6 bits (56), Expect = 1.4 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +2 Query: 83 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 199 ++PV R SVV V +P+ +H +S ++G Q+ Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311 >SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Spt6|Schizosaccharomyces pombe|chr 1|||Manual Length = 1365 Score = 24.6 bits (51), Expect = 5.7 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +1 Query: 19 EIIHLLTGENPLQVLVTAIINSGPREDSTR 108 EI +LTGENP ++ AI+ R + R Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063 >SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21|Schizosaccharomyces pombe|chr 3|||Manual Length = 911 Score = 23.8 bits (49), Expect = 10.0 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 82 SGPREDSTRIGRAGTVRRQAVDVSPL 159 SG + GRA + R+AVD SPL Sbjct: 7 SGRANELRTPGRANSSSREAVDSSPL 32 >SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1009 Score = 23.8 bits (49), Expect = 10.0 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = +1 Query: 286 PTPSKRRTSWSVLLNPT 336 PTPS +R S S++ NP+ Sbjct: 351 PTPSGKRVSLSLVANPS 367 >SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces pombe|chr 2|||Manual Length = 780 Score = 23.8 bits (49), Expect = 10.0 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -1 Query: 135 TTNCTRTTDPSRIFTGSRVDNGSHEYLQR 49 +TN TT PS F VD+G +Y+ R Sbjct: 197 STNFASTTFPSVPFHPLPVDSGLQKYIDR 225 >SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 750 Score = 23.8 bits (49), Expect = 10.0 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 258 INAAKGSSNSYAIKKKDELER 320 +N+ + NS ++KKDELE+ Sbjct: 135 LNSEISNQNSLILQKKDELEK 155 >SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharomyces pombe|chr 2|||Manual Length = 550 Score = 23.8 bits (49), Expect = 10.0 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 190 TKARLLG*LGARVKHQRLDDELYPH 116 T+A +LG A VK + DE+ PH Sbjct: 438 TEALMLGKTPAEVKAEGTPDEIVPH 462 >SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1|||Manual Length = 1841 Score = 23.8 bits (49), Expect = 10.0 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +3 Query: 159 APSQPSNLAFVHRCT 203 A S PSN+AF+ CT Sbjct: 469 ASSSPSNIAFLEYCT 483 >SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr 1|||Manual Length = 1315 Score = 23.8 bits (49), Expect = 10.0 Identities = 8/31 (25%), Positives = 16/31 (51%) Frame = -1 Query: 150 NINGLTTNCTRTTDPSRIFTGSRVDNGSHEY 58 ++ G+ NC +++ RIF D +E+ Sbjct: 178 SVQGINVNCIVSSEDGRIFFSGNKDPNLYEF 208 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,544,841 Number of Sequences: 5004 Number of extensions: 27380 Number of successful extensions: 64 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 61 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 64 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 134126124 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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