Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30262
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 147 3e-36
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 147 3e-36
07_03_0100 + 13389899-13390219,13390723-13390841,13391220-133913... 32 0.15
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 27 4.1
04_04_1314 - 32583061-32583393,32583630-32583926,32585130-32585132 27 5.5
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672... 27 5.5
09_02_0489 - 9847903-9848081,9848916-9849107,9849195-9849276,984... 26 9.5
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 147 bits (356), Expect = 3e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 1 IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180
IVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI
Sbjct: 87 IVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAI 146
Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255
+LL TGARE+AFRNIKTIAEC+AD+
Sbjct: 147 YLLTTGARESAFRNIKTIAECLADE 171
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338
LINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 172 LINAAKGSSNSYAIKKKDEIERVAKANR 199
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 147 bits (356), Expect = 3e-36
Identities = 70/85 (82%), Positives = 78/85 (91%)
Frame = +1
Query: 1 IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180
IVKHA EIIHLLT NP+QV+V AIINSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI
Sbjct: 88 IVKHAMEIIHLLTDANPIQVIVDAIINSGPREDATRIGSAGAVRRQAVDISPLRRVNQAI 147
Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255
+LL TGARE+AFRNIKTIAEC+AD+
Sbjct: 148 YLLTTGARESAFRNIKTIAECLADE 172
Score = 56.0 bits (129), Expect = 1e-08
Identities = 26/28 (92%), Positives = 28/28 (100%)
Frame = +3
Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338
LINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 173 LINAAKGSSNSYAIKKKDEIERVAKANR 200
>07_03_0100 +
13389899-13390219,13390723-13390841,13391220-13391315,
13391481-13391553,13392055-13392123
Length = 225
Score = 32.3 bits (70), Expect = 0.15
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = -2
Query: 218 LNAASRAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPE 81
L+A+SR P + +I RR+G + + RR+ P +P +R PE
Sbjct: 49 LHASSRVPAARHRIVCPCRRRGGSPSLTRRSSPEKPGPFSQTRSPE 94
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = +1
Query: 130 RRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVA 249
RR+AV + +RR+ A WL GAR A R A C A
Sbjct: 9 RREAVRAAHVRRIEAAAWL---GARRAT-RREDAAARCAA 44
>04_04_1314 - 32583061-32583393,32583630-32583926,32585130-32585132
Length = 210
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/28 (32%), Positives = 18/28 (64%)
Frame = +2
Query: 176 QSGFCAQVHVRLHSEILKQSQSVLQMIN 259
+SG C +H RL+ + + + S +QM++
Sbjct: 2 ESGGCPYIHFRLYEDCQRMTSSYVQMVS 29
>02_05_0969 +
33165396-33165935,33166352-33166883,33166988-33167242,
33167515-33167606,33167745-33167942,33168049-33168240,
33168341-33168562,33168858-33169024,33169117-33169210,
33169308-33169364,33169459-33169587,33169681-33169752,
33170180-33170293,33170419-33170580,33170666-33170794,
33171057-33171158,33171266-33171342,33171470-33171592,
33171666-33172227
Length = 1272
Score = 27.1 bits (57), Expect = 5.5
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Frame = +1
Query: 25 IHLLTGENPLQVLVTAIINSGPRED-----STRIGRAGTVRRQAVDVSPLRRVNQAIWLL 189
+ L+ GE L V A + PRED +T A VR Q V +P+ A L
Sbjct: 22 LSLMDGEPDLAAAVLARLGGSPREDDQHLCATAAAMAQAVRDQGVAATPVAYFAAAAAAL 81
Query: 190 CTGAREAA 213
AR A
Sbjct: 82 APLARAGA 89
>09_02_0489 -
9847903-9848081,9848916-9849107,9849195-9849276,
9849529-9849722,9851009-9851601,9851827-9851870
Length = 427
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 9 TCV*NYSLVNWRKPSASTRDCH 74
TC + + WR+PS R CH
Sbjct: 32 TCKIAHGIRKWRRPSRRRRSCH 53
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,954,605
Number of Sequences: 37544
Number of extensions: 183749
Number of successful extensions: 402
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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