Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30262
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)               167   3e-42
SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  30   0.80 
SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)                  30   0.80 
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)           29   1.8  
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)              27   5.6  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      27   7.4  
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_52418| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  
SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.8  

>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
          Length = 272

 Score =  167 bits (406), Expect = 3e-42
 Identities = 78/85 (91%), Positives = 84/85 (98%)
 Frame = +1

Query: 1   IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180
           I+KH+FEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI
Sbjct: 160 IIKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 219

Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255
           WLLCTGARE+AFRNIK+IAEC+AD+
Sbjct: 220 WLLCTGARESAFRNIKSIAECLADE 244



 Score = 58.0 bits (134), Expect = 3e-09
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338
           LINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 245 LINAAKGSSNSYAIKKKDELERVAKSNR 272


>SB_18592| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 124 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADD*LMQLRVHLTP 288
           TV  +A+     R +  A W +C+G+  A  ++ + I + +  D L  L +HL P
Sbjct: 186 TVGARALSKHCHRDITSAFWGICSGSEMAKNKHAQRIMDRILSD-LSWLNIHLLP 239


>SB_10104| Best HMM Match : DUF1298 (HMM E-Value=0.85)
          Length = 282

 Score = 29.9 bits (64), Expect = 0.80
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 124 TVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECVADD*LMQLRVHLTP 288
           TV  +A+     R +  A W +C+G+  A  ++ + I + +  D L  L +HL P
Sbjct: 186 TVGARALSKHCHRDITSAFWGICSGSEMAKNKHAQRIMDRILSD-LSWLNIHLLP 239


>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
          Length = 328

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 255 IICNTLCDCFNISECSLTCTCAQKPDCLVDSA 160
           + C   C C   + C   CTC Q   C+V SA
Sbjct: 224 LCCCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255


>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
          Length = 359

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -1

Query: 249 CNTLCDCFNISECSLTCTCAQKPDC 175
           C +  +C + SEC  T  CA   +C
Sbjct: 103 CESTTECESTSECESTSECASTTEC 127


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 249 CNTLCDCFNISECSLTCTCAQKPDC--LVDSAQG*NINGLTTNC 124
           C     C + ++ +LTCTC ++ +C    D   G + N   T C
Sbjct: 271 CEHRAKCISNTDGTLTCTCRKEENCPGRADYVCGSDGNSYFTEC 314


>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1338

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 203 RAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPELI 75
           R P    +IA   R+   T  A ++T P+RP   ++ +G  L+
Sbjct: 461 RRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQTKKGNRLM 503


>SB_52418| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 15/48 (31%), Positives = 28/48 (58%)
 Frame = +1

Query: 4   VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 147
           V+HA +I+ ++  +NP   LV+  + + P E+   I R   ++R A+D
Sbjct: 369 VRHADQIVRVIPPDNPPGALVSTGLQATPSEELI-IAR---IKRYAID 412


>SB_24840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = -1

Query: 255 IICNTLCDCFNISECSLTCTCAQKPDCLVDSA 160
           + C   C C   + C   C C Q   C+V SA
Sbjct: 224 LCCCVTCRCSVCTCCPCDCPCLQCAPCIVFSA 255


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,853,274
Number of Sequences: 59808
Number of extensions: 228207
Number of successful extensions: 644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)