Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30262
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical pr...   166   6e-42
Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical pr...    30   0.53 
Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical pr...    29   0.93 
Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical pr...    29   0.93 
AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear recep...    29   0.93 
AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear recep...    29   0.93 
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    26   8.7  

>Z68751-1|CAA92971.1|  210|Caenorhabditis elegans Hypothetical
           protein T05E11.1 protein.
          Length = 210

 Score =  166 bits (403), Expect = 6e-42
 Identities = 77/85 (90%), Positives = 84/85 (98%)
 Frame = +1

Query: 1   IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180
           IVKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAI
Sbjct: 98  IVKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAI 157

Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255
           WLLCTGAREAAFRN+KTIAEC+AD+
Sbjct: 158 WLLCTGAREAAFRNVKTIAECLADE 182



 Score = 58.0 bits (134), Expect = 2e-09
 Identities = 28/28 (100%), Positives = 28/28 (100%)
 Frame = +3

Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338
           LINAAKGSSNSYAIKKKDELERVAKSNR
Sbjct: 183 LINAAKGSSNSYAIKKKDELERVAKSNR 210


>Z72503-6|CAA96594.4|  273|Caenorhabditis elegans Hypothetical
           protein C26C6.8 protein.
          Length = 273

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 18/58 (31%), Positives = 29/58 (50%)
 Frame = +2

Query: 77  STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 250
           S  D + ++ G  V V  +  P   +    S  QSGF    HV++  EIL+Q+  V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205


>Z79604-3|CAD36502.1|  817|Caenorhabditis elegans Hypothetical
           protein ZK662.3b protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 219 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 109
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>Z79604-2|CAB01900.1|  780|Caenorhabditis elegans Hypothetical
           protein ZK662.3a protein.
          Length = 780

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 219 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 109
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494


>AF332205-1|AAK17976.1|  817|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 817

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 219 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 109
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531


>AF332204-1|AAK17975.1|  519|Caenorhabditis elegans nuclear receptor
           NHR-48 protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 219 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 109
           S C+ +C C + P   C+VD      +NG ++N +  TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233


>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
           protein F45E4.4 protein.
          Length = 2361

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 93  TGSRVDNGSHEYLQRVFSS*QVNNFKRMFD 4
           TGSR  +GS  + Q  FS+  ++ FK  FD
Sbjct: 226 TGSRHSSGSSAHSQFGFSTPSISGFKIFFD 255


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -1

Query: 252 ICNTLCDCFNI-SECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD 109
           IC   C    I S+CS TC  A  P C   S    N    +T C  T D
Sbjct: 61  ICQPQCPRAEINSDCSATCVRACIPSC---SKSTGNTFACSTTCESTCD 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,632,255
Number of Sequences: 27780
Number of extensions: 164149
Number of successful extensions: 470
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)