Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30262
         (399 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   144   1e-35
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   144   3e-35
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   144   3e-35
At1g59590.1 68414.m06702 expressed protein                             28   2.6  
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    27   6.1  
At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase...    26   8.0  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    26   8.0  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  144 bits (350), Expect = 1e-35
 Identities = 68/85 (80%), Positives = 78/85 (91%)
 Frame = +1

Query: 1   IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180
           IVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154

Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255
           +LL TGAREAAFRNIKTIAEC+AD+
Sbjct: 155 FLLTTGAREAAFRNIKTIAECLADE 179



 Score = 56.0 bits (129), Expect = 9e-09
 Identities = 26/28 (92%), Positives = 28/28 (100%)
 Frame = +3

Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338
           LINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  144 bits (348), Expect = 3e-35
 Identities = 67/85 (78%), Positives = 78/85 (91%)
 Frame = +1

Query: 1   IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180
           IVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154

Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255
           +L+ TGAREAAFRNIKTIAEC+AD+
Sbjct: 155 FLITTGAREAAFRNIKTIAECLADE 179



 Score = 56.0 bits (129), Expect = 9e-09
 Identities = 26/28 (92%), Positives = 28/28 (100%)
 Frame = +3

Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338
           LINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  144 bits (348), Expect = 3e-35
 Identities = 67/85 (78%), Positives = 78/85 (91%)
 Frame = +1

Query: 1   IVKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAI 180
           IVKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI
Sbjct: 95  IVKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAI 154

Query: 181 WLLCTGAREAAFRNIKTIAECVADD 255
           +L+ TGAREAAFRNIKTIAEC+AD+
Sbjct: 155 FLITTGAREAAFRNIKTIAECLADE 179



 Score = 56.0 bits (129), Expect = 9e-09
 Identities = 26/28 (92%), Positives = 28/28 (100%)
 Frame = +3

Query: 255 LINAAKGSSNSYAIKKKDELERVAKSNR 338
           LINAAKGSSNSYAIKKKDE+ERVAK+NR
Sbjct: 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207


>At1g59590.1 68414.m06702 expressed protein
          Length = 211

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 270 KGSSNSYAIKKKDELERVAKSNR 338
           +GSS SYA+KKKD   +++  NR
Sbjct: 174 RGSSPSYAMKKKDFARKLSIENR 196


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 125 QFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVL 247
           +F ++P+ F    + TK    CA V +    +ILK S  +L
Sbjct: 733 KFSIQPVRFTALFKMTKVKDLCAVVELEKLIDILKHSHELL 773


>At4g38530.1 68417.m05454 phosphoinositide-specific phospholipase C
           nearly identical to phosphoinositide-specific
           phospholipase C GI:557880 from [Arabidopsis thaliana];
           contains Pfam profile: PF00388
           phosphatidylinositol-specific phospholipase C
          Length = 526

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 274 VHLTPTPSKRRTSWSVLLNPTVKIY 348
           VH T TP+ + TSW+ + N  ++ Y
Sbjct: 223 VHTTRTPTVKETSWNRVANKILEEY 247


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 26.2 bits (55), Expect = 8.0
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 237 CDCFNISECSLTCTCAQK 184
           CD FN SE  +  TC QK
Sbjct: 735 CDSFNESEAGMRVTCRQK 752


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,073,153
Number of Sequences: 28952
Number of extensions: 148042
Number of successful extensions: 333
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 575830496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)