Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30261
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 0.87
SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit |Schizosa... 26 3.5
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 3.5
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 6.2
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom... 25 6.2
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 6.2
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 25 6.2
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 8.1
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 8.1
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 25 8.1
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 0.87
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +1
Query: 265 TNETKMEKTYREMRTEVQEFNQ-KFWTHHNTRFFQEREDYLKKNLPE 402
T E K+ + YR+ + +V+++ + K T N +F +E E+ L+K E
Sbjct: 282 TTEEKLYEQYRQEQMKVRQYGEPKLRTIDNAKF-KEEEENLRKRFTE 327
>SPAC23A1.12c |||phenylalanine-tRNA ligase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 128 SYLLLRQLNTNDSKCVQIPNPKKISSDMV 214
+Y LR+ T+DSK VQ+ NPK + +V
Sbjct: 413 NYAWLRK--TDDSKAVQLANPKTLEFQVV 439
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 3.5
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 131 YLLLRQLNTNDSKCVQIPNPKKISSDMVGPPDPVS 235
++ ++ ++ N ++ +PNP + S+ PDP+S
Sbjct: 143 FVFMKNIHQNIARNSTVPNPVQESNSSSSQPDPLS 177
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 6.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 403 PQVNSSSNNLLFPEKILYYGASKTFG*TLVPLFSSLYKFSP 281
P S+ NN+ L Y K +VPLFS L++ P
Sbjct: 259 PFHGSNPNNIFKKIMSLEYELPKLLPPDIVPLFSHLFRIQP 299
>SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1021
Score = 25.4 bits (53), Expect = 6.2
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +2
Query: 74 SIVMVPIRVKNIKRHKVWSYLLLRQLNTNDSKCVQIPNPK-KISSDMVGPPDPVSNLRRV 250
+I+ + + K K+H + Q+ +NDS VQ P + +I D V P +
Sbjct: 818 TILAILKQKKAKKKHAAREMEISSQIPSNDSSNVQTPTAESEIEEDGVSEPISAEVIEDQ 877
Query: 251 ILNSLQTKRKWRKLIER*EQRYKSLTKSFGR 343
NS K +R E+++ + +SF R
Sbjct: 878 SRNSEAENEKGLSTEQRDEKKHAKV-ESFQR 907
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 6.2
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +2
Query: 131 YLLLRQLNTNDSKCVQIPNPKKISSDMVGPPDPVSNLRRVILNSLQTKRKWRKLIER*EQ 310
Y LL + N QI + KK +M G L R + N + K++ L+E +
Sbjct: 107 YPLLIEAANNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAE 166
Query: 311 RYKSLTK 331
+ ++TK
Sbjct: 167 KRAAITK 173
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 6.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 334 FWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMS 435
F +H NTR+ + Y KN+P+ + L ++ S
Sbjct: 261 FDSHVNTRYSMSWDCYSSKNIPKNTEALPNNDSS 294
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 8.1
Identities = 20/83 (24%), Positives = 29/83 (34%)
Frame = +1
Query: 235 EFTKGNFKQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQN 414
E + + +NE K Y + +V N F THH F KN +
Sbjct: 943 EEEENDMSSTSNEAGNLKKYDQPNLKVSGKNDSFVTHHTPGAFPND----SKNKELNRHF 998
Query: 415 LSADEMSVFYKAFLDKNWKAHIS 483
L D+ + F+ K K S
Sbjct: 999 LKVDDSAPLDDTFMSKKVKLDFS 1021
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = -2
Query: 351 IMVRPKLLVKLLYLCSHLSISF 286
+M+R K L+KLL+L S LSI+F
Sbjct: 776 VMIR-KGLIKLLFLVSILSIAF 796
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 25.0 bits (52), Expect = 8.1
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 271 ETKMEKTYREMRTEVQEFNQKFWT-HHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYK 447
E K+ K+ E+ + + + HH T + E+E KK E ++ + D SV +
Sbjct: 642 EPKLAKSKPELLAKEEGITDSWIVKHHETLYELEKEKIKKKFDRENEKLAAEDPKSVLPE 701
Query: 448 AFLDKNWKA 474
+ L+ KA
Sbjct: 702 SELEVRLKA 710
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,139
Number of Sequences: 5004
Number of extensions: 44241
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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