Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30261
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0166 - 6065088-6065093,6066671-6068544,6068643-6069548,606... 30 1.6
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558... 30 1.6
06_03_0032 - 15697530-15697669,15699215-15699437,15699823-156999... 29 2.7
09_01_0005 - 193214-193228,193659-193776,193876-194072,194534-19... 28 6.3
08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128 28 6.3
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 28 6.3
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379... 27 8.3
04_04_1650 - 35051728-35051823,35052054-35052162,35052270-350524... 27 8.3
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 27 8.3
03_01_0338 - 2667578-2668659,2668771-2668828 27 8.3
>10_02_0166 -
6065088-6065093,6066671-6068544,6068643-6069548,
6069623-6069676,6069751-6069808
Length = 965
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 229 SIEFTKGNFKQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQERED 378
+I F G+F T +++ Y MR+ V F +HN F +R++
Sbjct: 130 NIRFFNGHFSFTTLGVSLDERYTNMRSGVYTFRAHGQIYHNIHSFGQRDN 179
>10_02_0129 +
5584585-5584732,5586567-5586968,5587038-5587106,
5587181-5587234,5587309-5588214,5588313-5590283,
5590833-5591235,5591845-5591857
Length = 1321
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +1
Query: 229 SIEFTKGNFKQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQERED 378
+I F G+F T +++ Y MR+ V F +HN F +R++
Sbjct: 317 NIRFFNGHFSFTTLGVSLDERYTNMRSGVYTFRAHGQIYHNIHSFGQRDN 366
>06_03_0032 -
15697530-15697669,15699215-15699437,15699823-15699929,
15700047-15700224,15700393-15700455,15700474-15700602,
15701211-15701430,15702162-15702262,15702954-15703062,
15705169-15705290,15705473-15705515,15705848-15705903,
15705983-15706089,15706167-15706342,15706507-15706618,
15706711-15706759,15707184-15707276,15707452-15707571,
15707686-15707787,15709442-15709540,15710103-15710237,
15710421-15710499,15710747-15710822,15710904-15710993,
15711139-15711217,15711304-15711338,15711457-15711531,
15712628-15713375
Length = 1221
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Frame = +1
Query: 244 KGNFKQPTNETK-MEKT--YREMRTEVQEFNQKFWTHH 348
+ NF +PT++ + EKT + + T ++E ++W HH
Sbjct: 597 EANFIRPTHDKQDFEKTGLFHRLETRLKEMTLEYWKHH 634
>09_01_0005 -
193214-193228,193659-193776,193876-194072,194534-195493
Length = 429
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +1
Query: 295 REMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNW 468
+++R +V+ F +++ T F + E K P G Q + + + F KA++++ W
Sbjct: 319 KQVRRKVKGFFKRY-PDAQTAFSADPEKMAKYLAPLGLQRVKVNRIQRFSKAYVEEEW 375
>08_01_0206 - 1645033-1645133,1645739-1645800,1645935-1646128
Length = 118
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 520 NNLKSSCTIQCCTRCELSNFYLKTLCRIHSFRQ 422
N +S C QCC C + + C IH FR+
Sbjct: 60 NVARSRCPFQCCKSC---CYKAQNPCHIHGFRE 89
>05_04_0141 -
18364065-18364176,18364722-18364948,18365183-18365390,
18365497-18365706,18366078-18366180,18366214-18366325,
18367061-18367204,18367835-18367936,18368081-18368186,
18368301-18368335
Length = 452
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +2
Query: 107 IKRHKVWSYLLLRQLNTNDSKCVQIPNPKKISSDMVGPPDPVSNLRRVILNSLQTKRKWR 286
IK + V Y +L ++ N PN I +M+ PP+ VS + V+ ++ + WR
Sbjct: 120 IKDNFVLVYQILDEMMDNGFPLTTEPN---ILKEMIAPPNIVSKMLNVVTDAAASFVPWR 176
Query: 287 KLI 295
+
Sbjct: 177 TTV 179
>10_08_0568 +
18837195-18837203,18837694-18837741,18837853-18837912,
18837986-18838155,18838297-18838369,18838529-18838594,
18838685-18838768,18838950-18839027,18839122-18839205,
18839562-18839641,18839791-18839848,18839933-18840235,
18840361-18840531,18840972-18841204,18841303-18841705,
18841961-18842212,18842293-18842790,18843073-18843170,
18843314-18843413,18843653-18843798,18843912-18844068
Length = 1056
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 373 EDYLKKNLPEGQQNLSADEMSVFYK-AFLDKNW 468
ED++ + P GQ+ L A +M+ Y A ++K+W
Sbjct: 65 EDFVDPDTPAGQKKLLASQMAKQYNPAAVEKSW 97
>04_04_1650 -
35051728-35051823,35052054-35052162,35052270-35052416,
35052516-35052637,35052726-35052825,35052895-35053095,
35053202-35053407,35053778-35053803,35054239-35054327,
35054427-35054635,35055577-35055672,35055754-35055924
Length = 523
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 217 SAGSSIEFTKGNFKQPTNETKMEKTYREMRTEVQEFNQKF 336
S GSSI+ T+G+F+ N T +E ++ FN +F
Sbjct: 379 SVGSSIDVTQGSFRNIKNSTTSRSVIKE---RLKCFNMRF 415
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 27.5 bits (58), Expect = 8.3
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +1
Query: 373 EDYLKKNLPEGQQNLSADEMSVFY-KAFLDKNWKA 474
ED++ ++ P GQ+ L A +M+ Y + ++K+W A
Sbjct: 78 EDFIDQDTPNGQKKLLAPQMANQYCPSTVEKSWYA 112
>03_01_0338 - 2667578-2668659,2668771-2668828
Length = 379
Score = 27.5 bits (58), Expect = 8.3
Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -2
Query: 315 YLCSHLSISFLHFRFVCRLFKITLRKF--DTGSGG 217
+LCSHL H R R K TLRK D G G
Sbjct: 132 FLCSHLLKDIEHIRLRYRPLKHTLRKLASDVGVSG 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,291,824
Number of Sequences: 37544
Number of extensions: 234269
Number of successful extensions: 625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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