Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30261
(586 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_49337| Best HMM Match : SGS (HMM E-Value=3.3) 50 1e-06
SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084) 31 0.91
SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098) 30 1.6
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0) 29 2.8
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 29 3.7
SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42) 29 3.7
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.9
SB_22827| Best HMM Match : TM_helix (HMM E-Value=0.57) 28 4.9
SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_4668| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33) 28 6.4
SB_40742| Best HMM Match : Pox_A32 (HMM E-Value=0.042) 28 6.4
SB_38290| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_25069| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_23568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_15033| Best HMM Match : Dynein_light (HMM E-Value=4) 27 8.5
SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.5
SB_25978| Best HMM Match : PqqD (HMM E-Value=1.7) 27 8.5
SB_7884| Best HMM Match : rve (HMM E-Value=2.1e-15) 27 8.5
SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11) 27 8.5
>SB_49337| Best HMM Match : SGS (HMM E-Value=3.3)
Length = 230
Score = 50.4 bits (115), Expect = 1e-06
Identities = 23/40 (57%), Positives = 30/40 (75%)
Frame = +1
Query: 388 KNLPEGQQNLSADEMSVFYKAFLDKNWKAHISYNIEWYKK 507
++L G+Q +ADE+SVFYK FLDKN++ H Y EWYKK
Sbjct: 78 ESLKGGKQ--AADELSVFYKDFLDKNYQLHKEYQWEWYKK 115
>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 31.1 bits (67), Expect = 0.69
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Frame = +1
Query: 274 TKMEKTYREMRTEVQ-EFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKA 450
T+ Y E T+ E+N ++ T +NT + E +Y+ + + E + + E + Y
Sbjct: 101 TEYNNEYTEYNTDYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNT-EYNTEYNT 159
Query: 451 FLDKNWKAHISYNIEWYKKILSY 519
+ N + + YN E+ + I Y
Sbjct: 160 --EYNTEYNTEYNTEYTEYITEY 180
>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
Length = 2086
Score = 30.7 bits (66), Expect = 0.91
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +2
Query: 188 PKKISSDMVGPPDPVSNLRRVILNSLQTKRKWRK----LIER*EQRYKSLTKSFGRTII- 352
P +++ D+ P +NLRR+ NS+Q+ ++W K L E L K F II
Sbjct: 630 PSELTLDVTCTPRNRANLRRLKTNSVQSFQRWEKENELLYAMIEDETAWLAKLFTEIIIT 689
Query: 353 QDFF 364
DFF
Sbjct: 690 PDFF 693
>SB_25293| Best HMM Match : DUF1665 (HMM E-Value=0.098)
Length = 1450
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 230 VSNLRRVILNSLQTKRKWRKLIER*EQRYKSLTKS-FGRTIIQDFFRKEK 376
V N R+++L + + R W + + QR++S+ K + R +++ F K K
Sbjct: 489 VLNRRKIVLKAFYSWRNWTEYAKVLHQRFQSMCKEYYNRALVRQTFVKWK 538
>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
Length = 1127
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 334 FWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAHI 480
FW H + + +++KKN P G AD +F F D N+ A +
Sbjct: 63 FWNHWKQQHYPSCIEFMKKNYPSGFS--YADFGPMFKAEFFDPNYFAKL 109
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +2
Query: 209 MVGPPDPVSNLRRVILNSLQTKRKWRKLIER*EQRYKSLTKSFGRTI 349
+ G PD V+ RR++L+ LQT+ + I R + +K + G+T+
Sbjct: 173 VTGKPDTVAKARRLVLSQLQTQAQIEIQIPR--EHHKFILGKGGKTL 217
>SB_18710| Best HMM Match : Glycophorin_A (HMM E-Value=0.42)
Length = 1451
Score = 28.7 bits (61), Expect = 3.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 208 YGRSAGSSIEFTKGNFKQPTNETKMEKTYREMRTEVQEF 324
Y G + EF++ T + + TY E+RTEV+++
Sbjct: 1320 YEELRGDNSEFSEQKRDSSTRKDQASDTYEELRTEVKDY 1358
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 250 NFKQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPE 402
N +QP +T+ T +++ ++ + W HH+ F+E D +K NLP+
Sbjct: 102 NPQQPAPKTR---TTNQLQFLLKTVLKGLWRHHHAWPFREPVDAVKLNLPD 149
>SB_22827| Best HMM Match : TM_helix (HMM E-Value=0.57)
Length = 969
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = -2
Query: 243 RKFDTGSGGPTISLEIFFG---FGI*THLESFVLS 148
R+F +GSG P++S E F+G F + L + VLS
Sbjct: 233 RRFVSGSGAPSVSPESFYGDNKFALWIELRTTVLS 267
>SB_42261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 544 SLTCKPSLNNLKSSCTIQCCTRCELSNFYLKTLCRIHS 431
S TC PS ++ S CT + CT ++ KTL + +
Sbjct: 112 SQTCSPSTKSIGSECTTE-CTEADVQATCEKTLVSVET 148
>SB_4668| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 186
Score = 27.9 bits (59), Expect = 6.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 412 NLSADEMSVFYKAFLD-KNWKAHISYNIEWYKK 507
N + E + Y A D NWK ++SY I+WYK+
Sbjct: 72 NKAVMECHLQYMARFDFPNWK-NVSYEIKWYKQ 103
>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 633
Score = 27.9 bits (59), Expect = 6.4
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 298 EMRTEVQ-EFNQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAF-LDKNWK 471
E TE E+N ++ T +NT + E +Y+ + + E + + D + + + + N +
Sbjct: 377 EYNTEYNTEYNTEYNTEYNTEYNTEYTEYITEYITEYNTDYNTDYNTEYNTEYNTEYNTE 436
Query: 472 AHISYNIEW 498
+ YN E+
Sbjct: 437 YNTEYNTEY 445
>SB_49310| Best HMM Match : Piwi (HMM E-Value=4.9e-33)
Length = 952
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -2
Query: 363 KKSCIMVRPKLLVKLLYLCSHLSISFLHF 277
+KS V P+LL+ Y C H+SI ++HF
Sbjct: 916 QKSFSDVFPRLLLSFAY-CGHVSIVYVHF 943
>SB_40742| Best HMM Match : Pox_A32 (HMM E-Value=0.042)
Length = 579
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -2
Query: 243 RKFDTGSGGPTISLEIFFG---FGI*THLES 160
R+F +GSG P++S E F+G F + HL +
Sbjct: 323 RRFVSGSGAPSVSSESFYGHNKFALWIHLRT 353
>SB_38290| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 182 PNPKKISSDMVGPPDPVSNLRRVILNSLQTKRKWRKL 292
PNP+ D P PV LR L + +KWR +
Sbjct: 48 PNPRINGEDNNQDPRPVIRLRHAQLAEIVDDKKWRSI 84
>SB_25069| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 182 PNPKKISSDMVGPPDPVSNLRRVILNSLQTKRKWRKL 292
PNP+ D P PV LR L + +KWR +
Sbjct: 74 PNPRINGEDNNQDPRPVIRLRHAQLAEIVDDKKWRSI 110
>SB_23568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/75 (24%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Frame = +1
Query: 235 EFTKGNFKQPTNETK-MEKTYREMRTE---VQEFNQKFWTHHNTRFFQEREDYLKKNLPE 402
+F+ GNFK E + + ++++R ++ + F++ HN +F + L +N
Sbjct: 100 DFSAGNFKLCLRELQNFDGAHKDIRVNWLAYEDLPRNFFSEHNVLYFANLQSPLAENRHA 159
Query: 403 GQQNLSADEMSVFYK 447
QN+ E +V Y+
Sbjct: 160 FSQNV---EFAVNYR 171
>SB_15879| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Frame = -1
Query: 538 TCKPSLNNLKSSCT--IQC--CTRCELSNFYLKTLCRIHS 431
TC S KSS QC C +C SN+ LK RIHS
Sbjct: 53 TCSDSQKPKKSSDKKLFQCKECGKCITSNYSLKEHLRIHS 92
>SB_15033| Best HMM Match : Dynein_light (HMM E-Value=4)
Length = 434
Score = 27.5 bits (58), Expect = 8.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -1
Query: 544 SLTCKPSLNNLKSSCTIQC 488
S TC PS+ ++ S CT +C
Sbjct: 211 SQTCSPSIKSIGSECTTEC 229
>SB_1752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 71 NSIVMVPIRVKNIKRHKVWSYLLLRQLNTNDSKCVQIPNPKKISSDMV 214
NS+ V + + R + S + LR++ + +S C + PNP +SDM+
Sbjct: 231 NSVSTVSLTLSENSRRGLRS-VFLREVTSPNSICQRNPNPFSTTSDMM 277
>SB_25978| Best HMM Match : PqqD (HMM E-Value=1.7)
Length = 303
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +1
Query: 184 KSEEDLK*YGRSAGSSIEFTKGNFKQPTNETKMEKTY----REMRTEVQEFNQKFWTHHN 351
K+ E++K R + ++ F + E Y MR +EF +H +
Sbjct: 33 KATEEVKSGNRDIANKVQHIGNKFLNAVEISAQEAAYLVLQMPMRRSTREFQFINTSHLD 92
Query: 352 TRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNW 468
R F ++ +K LP+ ++ +D + Y+ +N+
Sbjct: 93 ERTFLLKKFDKRKELPDNSPDIESDNLIERYQRRPKRNY 131
>SB_7884| Best HMM Match : rve (HMM E-Value=2.1e-15)
Length = 813
Score = 27.5 bits (58), Expect = 8.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -2
Query: 243 RKFDTGSGGPTISLEIFFG 187
R+F +GSG P++S E F+G
Sbjct: 222 RRFVSGSGAPSVSRESFYG 240
>SB_2495| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.2e-11)
Length = 2024
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +1
Query: 235 EFTKGNFKQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKK 390
E K NFK T T++ + + E ++ NQ+ ++ R E+ED L++
Sbjct: 324 EAEKANFKLKTEVTELNLKLKSYQQENEDLNQEVISYQ--RKVSEKEDQLQR 373
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,283
Number of Sequences: 59808
Number of extensions: 284384
Number of successful extensions: 2604
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 2508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2599
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1410146228
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -