Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30261
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-26|CAD31827.1|  142|Caenorhabditis elegans Hypothetical...    71   6e-13
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    35   0.049
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    35   0.049
Z99281-20|CAE18022.1|  214|Caenorhabditis elegans Hypothetical p...    33   0.15 
AC090999-10|AAK26141.2|  251|Caenorhabditis elegans Hypothetical...    32   0.34 
Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical p...    28   4.2  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    27   7.4  
AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical ...    27   7.4  

>AL132948-26|CAD31827.1|  142|Caenorhabditis elegans Hypothetical
           protein Y39B6A.34 protein.
          Length = 142

 Score = 70.9 bits (166), Expect = 6e-13
 Identities = 31/84 (36%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
 Frame = +1

Query: 268 NETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPE-GQ-QNLSADEMSVF 441
           NE+++E+ YR  R E+ ++N  FW  HN  F +++ D++++   E G+ +++SA+E+S F
Sbjct: 39  NESELERQYRLAREELNQWNSDFWAEHNQLFDRQKSDFVERKQQELGRLEHVSANELSEF 98

Query: 442 YKAFLDKNWKAHISYNIEWYKKIL 513
           Y+ FL+    A ++YN EWY++ L
Sbjct: 99  YRDFLNDRHVAMMAYNKEWYRRNL 122


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
            protein 1 protein.
          Length = 4568

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 271  ETKMEKTYREMRTEVQEFNQKFWTHHN-TRFFQEREDYLKKNLPEGQQNLSADEMSVFYK 447
            E  +E+  REMR   Q +  +   + N TR  +  +D   K L E Q +LSA ++S +YK
Sbjct: 1423 EMALEEFLREMREYWQNYEVELVNYQNKTRLIKGWDDLFNK-LKEHQNSLSAMKLSPYYK 1481

Query: 448  AF 453
             F
Sbjct: 1482 QF 1483


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
            protein.
          Length = 4568

 Score = 34.7 bits (76), Expect = 0.049
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 271  ETKMEKTYREMRTEVQEFNQKFWTHHN-TRFFQEREDYLKKNLPEGQQNLSADEMSVFYK 447
            E  +E+  REMR   Q +  +   + N TR  +  +D   K L E Q +LSA ++S +YK
Sbjct: 1423 EMALEEFLREMREYWQNYEVELVNYQNKTRLIKGWDDLFNK-LKEHQNSLSAMKLSPYYK 1481

Query: 448  AF 453
             F
Sbjct: 1482 QF 1483


>Z99281-20|CAE18022.1|  214|Caenorhabditis elegans Hypothetical
           protein Y57G11C.39 protein.
          Length = 214

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = +1

Query: 283 EKTYREMRTEVQEFNQKFWTHH--NTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFL 456
           EK    +R ++ EF+Q+  +HH  N++F  ER   + KNLPE  + LS     +      
Sbjct: 97  EKQTAGVRADIMEFHQRL-SHHVDNSKFRVER---IIKNLPEALRKLSEIVQDIDITRLQ 152

Query: 457 DKNWKAHISYNIE 495
           +KN  A++  ++E
Sbjct: 153 EKNRIANLYTSLE 165


>AC090999-10|AAK26141.2|  251|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.13 protein.
          Length = 251

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 25/95 (26%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
 Frame = +1

Query: 217 SAGSSIEF---TKGNFKQP--TNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDY 381
           S G  I+F    +G+F +P  +N   ME  Y E +      N+K +++ N  F + RE+ 
Sbjct: 26  SEGKEIQFFMERQGDFARPEQSNLNYMEPEYYEFKPG----NRKLYSNKNGAFQKTREEE 81

Query: 382 LKKNLPEGQQNLSADEMSVFYKAFLDKNWKAHISY 486
           + KN  + +++L  +     +K  L+   K +I++
Sbjct: 82  MLKNFEDEREHLEQEHNLKIHK--LENKRKNYIAF 114


>Z83228-5|CAB05731.1|  148|Caenorhabditis elegans Hypothetical
           protein F52F12.5 protein.
          Length = 148

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 241 TKGNFKQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPEGQQ 411
           +KGN K+ + E+K +++ +E   E     +KF     T+   E E  +K   PE Q+
Sbjct: 31  SKGNEKKSSTESKSKES-KETSKEEDLAQKKFLMTQKTQSMTEDEKEVKPKAPESQK 86


>U23168-11|AAC38811.2|  454|Caenorhabditis elegans Hypothetical
           protein B0228.8 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = +1

Query: 265 TNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDY----LKKNLPEGQQNLSADEM 432
           T E++  K YR+      +F+   +T+    +F+   D+    +++N  E +  +S  + 
Sbjct: 289 TYESEPGKFYRDR----YQFSMNKYTNVKVEYFENFLDWRIYQIQQNCTESRTKMSKSDA 344

Query: 433 SVFYKAFLDKNWKAHISYNIEW 498
           SV   A   + W   ++  + W
Sbjct: 345 SVVKMALASRRWDQMLNKGLSW 366


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 256  KQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTR 357
            ++  N T M+K  R+M+T + E  +   T  N R
Sbjct: 1100 EESANVTLMQKQMRDMQTTIDELREDMETERNAR 1133


>AF099913-5|AAC68752.1|  305|Caenorhabditis elegans Hypothetical
           protein C29F9.11 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 351 IMVRPKLLVKL-LYLCSHLSISFLHFRFVCRLFKITLRKF 235
           ++ RPKL+  L + LC+  S   L  R VCR  +  + KF
Sbjct: 10  LIFRPKLVFFLYICLCTRYSPQILRARKVCRSLRTAVDKF 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,493,610
Number of Sequences: 27780
Number of extensions: 235488
Number of successful extensions: 809
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)