Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30261
         (586 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   3.9  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   3.9  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   5.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   6.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   6.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   8.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.9  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   8.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   8.9  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 406 VPQVNSSSNNLLFPE-KILYY 347
           +P VNS+S N  FP  KI+ Y
Sbjct: 72  IPGVNSTSENKTFPTIKIVGY 92


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 406 VPQVNSSSNNLLFPE-KILYY 347
           +P VNS+S N  FP  KI+ Y
Sbjct: 72  IPGVNSTSENKTFPTIKIVGY 92


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -1

Query: 472 LSNFYLKTLCRIHSFRQLTNFVVPQVNSSSNNLLFPEKILY 350
           ++ + L  +C   + + +T+  V     S+NNL    K++Y
Sbjct: 1   MTKWLLLVVCLGIACQDVTSAAVNHQRKSANNLAHSMKVIY 41


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 229  SIEFTKGNFKQPTNETKMEKTYREMRTEVQEFNQ 330
            +++F+K + K+   +    KTY +    VQ FN+
Sbjct: 1029 TVDFSKEDGKEHHLQIMNLKTYTQYSVVVQAFNK 1062


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 318 LYLCSHLSISFLHFR 274
           LYL  HL++SF  FR
Sbjct: 260 LYLPFHLTLSFRDFR 274


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 318 LYLCSHLSISFLHFR 274
           LYL  HL++SF  FR
Sbjct: 255 LYLPFHLTLSFRDFR 269


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 113 FLYFLHELAPSRYY 72
           F +FLH+   +RYY
Sbjct: 257 FYFFLHKQVLNRYY 270


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/35 (22%), Positives = 18/35 (51%)
 Frame = -1

Query: 451 TLCRIHSFRQLTNFVVPQVNSSSNNLLFPEKILYY 347
           TL ++H+F  +T   + Q     + ++FP   + +
Sbjct: 425 TLAQLHNFTTMTPQEIAQWIDRRSRIVFPVAFIIF 459


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 481 SYNIEWYKKILS 516
           +YNI+W K ILS
Sbjct: 106 NYNIDWDKCILS 117


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 113 FLYFLHELAPSRYY 72
           F +FLH+   +RYY
Sbjct: 257 FYFFLHKQVLNRYY 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,398
Number of Sequences: 438
Number of extensions: 3158
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16993167
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)