Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30261
(586 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60520.1 68418.m07589 late embryogenesis abundant protein-rel... 31 0.57
At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 30 1.3
At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family pr... 29 1.7
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 1.7
At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family prot... 28 5.3
At3g27260.1 68416.m03407 DNA-binding bromodomain-containing prot... 28 5.3
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 27 7.0
At5g03000.1 68418.m00245 kelch repeat-containing F-box family pr... 27 7.0
At3g22030.1 68416.m02779 receptor-like protein kinase-related co... 27 7.0
At5g47990.1 68418.m05929 cytochrome P450 family protein similar ... 27 9.2
At3g02570.1 68416.m00248 phosphomannose isomerase type I family ... 27 9.2
At1g77980.1 68414.m09087 MADS-box family protein MADS-box protei... 27 9.2
>At5g60520.1 68418.m07589 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 338
Score = 31.1 bits (67), Expect = 0.57
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 532 KPSLNNLKSSCTIQCCTRCELSNFYLKTLC 443
KP +N K +C I C ++CE++ + K C
Sbjct: 74 KPKMNKKKKACFIDCSSKCEVTCKWRKANC 103
>At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive
effector-related similar to Endonuclease sen1
(Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar
to tRNA-splicing endonuclease positive effector
(Swiss-Prot:Q00416) [Saccharomyces cerevisiae]
Length = 1090
Score = 29.9 bits (64), Expect = 1.3
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 211 GRSAGSSIEFTKGNFKQP-TNETKMEKTYREMRTEVQEFNQKFWTH 345
G S+ + +++ +FK+P T+ T+ + T E R + N+KFW H
Sbjct: 204 GHSSSRKVSYSQRSFKKPATSSTQYQDTSVE-RLIREVTNEKFWRH 248
>At5g01310.1 68418.m00043 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain, weak hit to PF01661: Appr-1-p
processing enzyme family
Length = 912
Score = 29.5 bits (63), Expect = 1.7
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 325 NQKFWTHHNTRFFQEREDYLKKNLPEGQQNLSADEM 432
N+K W T FF++ D L++ +G+ N++++++
Sbjct: 830 NKKHWNSFTTSFFRDSVDVLEEVNSQGKANVASEDL 865
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 343 HHNTRFFQEREDYLKKNLPEGQQNLSADEMSVFYKAFLDKNWKAHISYNIEWYKKILSY* 522
H +E ++ +P+ +NLS +E ++ Y+ W H++Y+ EW KK L
Sbjct: 1089 HSYNSLKKEFRKVFEETIPD-HENLSEEEKNILYEKKASA-WY-HVTYHPEWVKKSLELQ 1145
Query: 523 D 525
D
Sbjct: 1146 D 1146
>At5g43140.1 68418.m05266 peroxisomal membrane 22 kDa family protein
contains Mpv17 / PMP22 family domain, Pfam:PF04117
Length = 254
Score = 27.9 bits (59), Expect = 5.3
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 439 IHSFRQLTNFVVPQVNSSSNNL 374
IH R+ NFV+P+V S S NL
Sbjct: 43 IHELRKTGNFVIPRVFSVSRNL 64
>At3g27260.1 68416.m03407 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 813
Score = 27.9 bits (59), Expect = 5.3
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 241 TKGNFKQPTNETKMEKTYREMRTEVQEFNQKFWTHHNTRFFQEREDYLKKNLPE 402
T G F+ + ET + + +K W+H ++ FQ D +K N+P+
Sbjct: 157 TSGKFES-SKETMTSTPNITLMKQCDTLLRKLWSHPHSWVFQAPVDVVKLNIPD 209
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 27.5 bits (58), Expect = 7.0
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -1
Query: 532 KPSLNNLKSSCTIQCCTRCELSNFYLKTLC 443
KP+ N C I C +CE + + KT C
Sbjct: 174 KPTKNKNTKGCFIDCTNKCEATCKWRKTNC 203
>At5g03000.1 68418.m00245 kelch repeat-containing F-box family
protein similar to SKP1 interacting partner 6
[Arabidopsis thaliana] GI:10716957; contains Pfam
profiles PF01344: Kelch motif, PF00646: F-box domain
Length = 354
Score = 27.5 bits (58), Expect = 7.0
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 445 CRIHSFRQLTNFVVPQVNSSSNNLLFPEKILYYGASKT 332
CR H R+L N +P+V+++++ + KI G SK+
Sbjct: 164 CRSHQCRRLPNMALPRVSAAAD--VIDGKIYVVGGSKS 199
>At3g22030.1 68416.m02779 receptor-like protein kinase-related
contains Pfam profile: PF01657 Domain of unknown
function; weak similarity to receptor-like protein
kinase homolog RK20-1 (GI:4530126) [Phaseolus vulgaris]
Length = 253
Score = 27.5 bits (58), Expect = 7.0
Identities = 18/70 (25%), Positives = 34/70 (48%)
Frame = -1
Query: 562 IFNNFLSLTCKPSLNNLKSSCTIQCCTRCELSNFYLKTLCRIHSFRQLTNFVVPQVNSSS 383
+F+++ C S + L I C + L+N YL CR+ ++ TN +V++
Sbjct: 1 MFSSYSLCKCLVSFHILAIQVLISCASSLNLTNEYLNHKCRV--IKENTN---QEVSTRK 55
Query: 382 NNLLFPEKIL 353
N+ L ++L
Sbjct: 56 NSTLSAVELL 65
>At5g47990.1 68418.m05929 cytochrome P450 family protein similar to
Cytochrome P450 93A3 (P450 CP5) (SP:O81973) [Glycine
max];
Length = 511
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 409 QNLSADEMSVFYKAFLDKNWK 471
+N+ ADE+ FYK LDK K
Sbjct: 156 RNIRADELERFYKTLLDKAMK 176
>At3g02570.1 68416.m00248 phosphomannose isomerase type I family
protein contains Pfam profile: PF01238 phosphomannose
isomerase type I
Length = 432
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = -3
Query: 224 PADRPYHLRSSSDLEFER 171
PAD HLRSSSDL+ R
Sbjct: 404 PADTEIHLRSSSDLKLYR 421
>At1g77980.1 68414.m09087 MADS-box family protein MADS-box protein
AGL66
Length = 332
Score = 27.1 bits (57), Expect = 9.2
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 131 YLL--LRQLNTNDSKCVQIPNPKKISSDMVGPPDPVSNLRRVILNSLQTKRKW 283
YLL L+QL + +Q+ NP I+SD+ V L++ +L + + RK+
Sbjct: 98 YLLRTLQQLKAENDIALQLTNPTAINSDVEELEHEVYKLQQQLLMAEEELRKY 150
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,639,275
Number of Sequences: 28952
Number of extensions: 213131
Number of successful extensions: 628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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