Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30260
(732 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07) 53 2e-07
SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 3e-07
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 3e-06
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 43 3e-04
SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07) 43 3e-04
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 42 5e-04
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 40 0.002
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 39 0.005
SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 38 0.006
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39) 38 0.011
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.026
SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23) 36 0.034
SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035) 36 0.045
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 35 0.078
SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24) 35 0.078
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 35 0.078
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 34 0.10
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 34 0.14
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.14
SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.24
SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.55
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 31 0.96
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 31 0.96
SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13) 31 1.3
SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18) 29 2.9
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 29 2.9
SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16) 29 3.9
SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_54892| Best HMM Match : DHH (HMM E-Value=0.057) 29 5.1
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 28 6.8
SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0) 28 6.8
SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07) 28 9.0
SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11) 28 9.0
SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
Length = 694
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/29 (75%), Positives = 26/29 (89%)
Frame = +3
Query: 597 AKNECTGMEIDGRRIRVDYSITQRAHTPT 683
AK TG+E+DGRRIRVDYS+T+RAHTPT
Sbjct: 218 AKERTTGIELDGRRIRVDYSVTKRAHTPT 246
Score = 48.0 bits (109), Expect = 8e-06
Identities = 20/33 (60%), Positives = 25/33 (75%)
Frame = +1
Query: 409 ENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPV 507
++T CLGVFGLSLYTTE+ + +F KYGPV
Sbjct: 175 KDTKEIGCLGVFGLSLYTTERDLRPVFEKYGPV 207
>SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 52.8 bits (121), Expect = 3e-07
Identities = 21/47 (44%), Positives = 35/47 (74%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V+ D ++G SRGF FV ++D+E AK +E G E+DGR++R+D++
Sbjct: 316 KVIFDRESGESRGFGFVDYDDVETAKKVLSEMAGAEVDGRQVRLDFA 362
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +3
Query: 540 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
GRSRGF + F ED A E G + GR IR++
Sbjct: 216 GRSRGFGYADFTSKEDYNKAL-ELNGEDCCGREIRIN 251
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 668
V +V D KTG+ +GFCF+ +ED +A + G+++ GR IRVD+ R
Sbjct: 8 VNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIKLGGRTIRVDHCSNYR 59
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/46 (45%), Positives = 29/46 (63%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
VQV+ D +T R RGF FV F ++ + A NE G E DGR ++V+
Sbjct: 258 VQVISDRETQRPRGFAFVTFGSKKNMEDAINELDGQEFDGRSMKVN 303
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/46 (39%), Positives = 30/46 (65%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V+V+ D +TGR RGF FV F ++ A ++ G ++DGR ++V+
Sbjct: 38 VKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDLDGRPMKVN 83
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 42.7 bits (96), Expect = 3e-04
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V+V+ D +TGR RGF FV F E+ + A +E G + DGR ++V+
Sbjct: 33 VKVITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDFDGRPMKVN 78
>SB_1160| Best HMM Match : RRM_1 (HMM E-Value=1.5e-07)
Length = 252
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/46 (41%), Positives = 30/46 (65%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V ++ D +TGR RGF FV F E+ + A +E G ++DGR ++V+
Sbjct: 125 VNIITDRETGRPRGFGFVTFGSKEEMEKAIDEFDGQDLDGRPMKVN 170
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 41.9 bits (94), Expect = 5e-04
Identities = 17/51 (33%), Positives = 32/51 (62%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 668
++V D +TG+ +G+ F ++D E A A G E++GR +RVD + +++
Sbjct: 55 RLVFDRETGKPKGYGFCEYKDQETALSAMRNLNGYELNGRALRVDSAASEK 105
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V+ D KTG S + F+ FE ED + A + + ID RRI VD+S
Sbjct: 150 EVIRDQKTGESLQYAFIEFEKDEDCERAYFKMDNVLIDDRRIHVDFS 196
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 39.5 bits (88), Expect = 0.003
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+ +V ++K + RG+ F+ +E D A G +IDGRRI VD
Sbjct: 35 ISMVYNSKASKPRGYAFIEYEHERDMHAAYKHADGKKIDGRRIVVD 80
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/65 (33%), Positives = 30/65 (46%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAST 695
QV I+ G SRGF FV + E+A+ + G +++G IRV Y R S
Sbjct: 236 QVAINPANGGSRGFAFVDYATAEEAEKGQRAHNGRQVEGSNIRVAYGSPGRTGASILGSQ 295
Query: 696 WANLQ 710
N Q
Sbjct: 296 LDNTQ 300
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRA 689
+V+VV D +S+GF FV F EDA A E + I G++++ +++ + T T+
Sbjct: 541 EVRVVKDPAKNKSKGFGFVSFVRREDAAKAIAEMDSVTIGGKQVKTNWAARKNNPTQTKP 600
Query: 690 STW 698
W
Sbjct: 601 LVW 603
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAS 692
VQ+ +D T + RGF FV FE ED A + E+ GR IRV+ + + +
Sbjct: 34 VQIPMDYTTSKHRGFGFVEFEFAEDTAAAIDNMNESELFGRTIRVNLAKPMKIKEGYSRA 93
Query: 693 TWA 701
W+
Sbjct: 94 VWS 96
>SB_23536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 414
Score = 38.7 bits (86), Expect = 0.005
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNEC-----TGMEIDGRRIRVDYSITQRAH 674
+V VV D +T RSR F +V F D +DA A + G EI GR + ++Y+ + +
Sbjct: 4 EVIVVYDRETRRSRNFGYVTFRDEQDAADAMKQMGGESGKGKEIFGRALNIEYAQEKESS 63
Query: 675 TPTR 686
P R
Sbjct: 64 APRR 67
>SB_23537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 371
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +3
Query: 543 RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 665
RSRGF FV F + EDA+ A G E+ GR +++ SI++
Sbjct: 97 RSRGFGFVTFANPEDAQTAVKSLNGKEVQGRTLKIAPSISR 137
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 641
++V+ D + G+S+GF FV FE E+A+ A N G EI GRR+
Sbjct: 138 LKVMTDPE-GKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRL 179
>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
Length = 507
Score = 37.5 bits (83), Expect = 0.011
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +3
Query: 525 IDAKTGRSRG--FCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 653
+D K R G F FV FED DA+ A G E DG RIRV++
Sbjct: 290 VDLKNRRGAGPPFAFVEFEDPRDAEDAVKGRDGHEFDGYRIRVEF 334
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
T CK+ + D TG+S G+ FV +++ +DA A E G + + ++V ++
Sbjct: 54 TSCKL--IRDRATGQSLGYAFVNYDNPDDANKAVREMNGARLQNKTLKVSFA 103
>SB_47564| Best HMM Match : RRM_1 (HMM E-Value=0.23)
Length = 44
Score = 35.9 bits (79), Expect = 0.034
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME 623
V +V D KTG+ +GFCF+ +ED +A + G++
Sbjct: 8 VNLVRDKKTGKQKGFCFLCYEDQRSTILAVDNFNGIK 44
>SB_28396| Best HMM Match : RRM_1 (HMM E-Value=0.00035)
Length = 258
Score = 35.5 bits (78), Expect = 0.045
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 543 RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
RSRGF FV E+ ED + + G E +GRR++V
Sbjct: 81 RSRGFGFVTLENQEDLEDVTRKFDGFEYEGRRLKV 115
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 34.7 bits (76), Expect = 0.078
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +3
Query: 552 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
GF FV +ED DA+ A E G + R IRV++S
Sbjct: 41 GFAFVEYEDYRDAEEAVRELDGANVCDRTIRVEFS 75
>SB_57433| Best HMM Match : RRM_1 (HMM E-Value=4.5e-24)
Length = 407
Score = 34.7 bits (76), Expect = 0.078
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
V+++ D KTG +GF +V FE +DA + + E GR+IRV
Sbjct: 85 VRLIRDRKTGIGKGFGYVLFES-KDAVVFALKMNNAEFKGRKIRV 128
Score = 28.7 bits (61), Expect = 5.1
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +3
Query: 561 FVYFEDMEDAK--IAKNECTGMEIDGRRIRVDYSITQRAHTPTRASTWANL 707
+V ++ E+A IA N G EIDG IRVD + +AH R+ NL
Sbjct: 16 YVVYKAAENANQAIASN---GEEIDGFHIRVDLASNDKAHDHQRSVFIGNL 63
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 34.7 bits (76), Expect = 0.078
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +3
Query: 486 LF*VWTRCK-VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSIT 662
+F V+ R K V + D SRGF +V + D E+ + A G +IDG+ I V +
Sbjct: 1176 IFSVYGRVKTVDLPTDRTNNLSRGFAYVEYVDPEECEKALKHMDGGQIDGQEIAVQSVLP 1235
Query: 663 QR 668
R
Sbjct: 1236 PR 1237
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +3
Query: 549 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 671
RG+ FV F+D DA+ A ++ G ++ G R+ V++S +R+
Sbjct: 722 RGYGFVEFDDHRDAEDAVHDLNGRDLIGERVVVEFSKGRRS 762
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 34.3 bits (75), Expect = 0.10
Identities = 19/47 (40%), Positives = 24/47 (51%)
Frame = +3
Query: 552 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAS 692
GF F FED DA+ A E G I G+R RV+ + P +AS
Sbjct: 39 GFAFCVFEDRRDAEDAVRELDGRYICGQRARVELAKGPSRGRPRQAS 85
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.9 bits (74), Expect = 0.14
Identities = 17/32 (53%), Positives = 20/32 (62%)
Frame = +3
Query: 561 FVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
FV FED DA A EC G E+ G RI V++S
Sbjct: 40 FVEFEDDRDADDAVYECNGKEMLGERILVEHS 71
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 33.9 bits (74), Expect = 0.14
Identities = 16/59 (27%), Positives = 32/59 (54%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRA 689
+ V +D +TG +G+ V +E ++A+ A G E+ G+ I VD++ + +R+
Sbjct: 322 LHVNLDRRTGFIKGYALVEYETFKEAQSALEALNGAEMLGQNISVDWAFIRGPSKKSRS 380
>SB_21838| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME----IDGRRIRVDYS-ITQRAHT 677
++++ D TG SRGFCFV +E+A M IDGR I Y+ ++ +
Sbjct: 439 IRLIKDKVTGTSRGFCFVELATIEEATQLLELIAAMNPPFMIDGRVITTLYARKSEPSPV 498
Query: 678 PTRAST 695
PT ST
Sbjct: 499 PTTKST 504
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 33.1 bits (72), Expect = 0.24
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +3
Query: 552 GFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
GF F F+D DA+ A E G I G+R+RV+
Sbjct: 69 GFAFCIFDDRRDAEDAVRELDGRYICGQRVRVE 101
>SB_46162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 291
Score = 32.7 bits (71), Expect = 0.32
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
KV ++ D ++GRSRGF FV + + A + + GR I V
Sbjct: 36 KVDILRDKESGRSRGFGFVLLQSADQIAPAIEKMNQSSVGGRNITV 81
>SB_34757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 435
Score = 32.3 bits (70), Expect = 0.42
Identities = 20/44 (45%), Positives = 24/44 (54%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V +D T RSRGF FV F+ EDAK + T I GR V
Sbjct: 145 EVKLDPNTRRSRGFGFVRFKKDEDAKNVLS--TSHRIQGRLCEV 186
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 31.9 bits (69), Expect = 0.55
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 671
+++ D+ TG S+GF F+ F + + A G + R I V Y+ + +
Sbjct: 131 KIMRDSDTGNSKGFAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKES 182
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 31.1 bits (67), Expect = 0.96
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDA 590
V + +DA TGR RGF FV F+ +A
Sbjct: 58 VDIKMDALTGRPRGFAFVQFKHQSEA 83
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 433 LGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
L V GLS TT++ + FSKYG + + + P GFA
Sbjct: 31 LFVGGLSYETTKESLKEYFSKYGELVGVDIKMDALTGRPRGFA 73
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+++ + + + R RGFCFV F D ED E I+G ++ V
Sbjct: 132 EIEYITEHSSNRRRGFCFVSF-DSEDTVDKICETQFHNIEGNKVEV 176
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.1 bits (67), Expect = 0.96
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDA----KIAKNECTGMEIDGRRIRVDYSIT 662
+VV+D T S+G FV + E + G+ +DG R++VD ++T
Sbjct: 446 KVVVDHLTQHSKGSAFVKYRSAESVTQCLAATDEDSEGLFLDGNRLQVDLAVT 498
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 543 RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAST 695
R RGF +V F EDA AK+ I GR I +D+S + P R T
Sbjct: 60 RCRGFGYVTFALEEDALKAKDNI--KSIKGRPIHLDFSEKKARTKPGREGT 108
>SB_12089| Best HMM Match : RRM_1 (HMM E-Value=7.4e-13)
Length = 260
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 543 RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 665
R GF FV F +A A+ + G +DGR++ V + Q
Sbjct: 122 RIEGFGFVTFNTAAEANKAREKLNGTIVDGRKVEVSLCMEQ 162
>SB_39475| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 333
Score = 29.9 bits (64), Expect = 2.2
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +1
Query: 382 HLGDRVRLLENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGF 558
HL D+ + L V L E +I +FSK+G V + +L + R P+G+
Sbjct: 156 HLRDKFSKFPTSLDKHTLFVSNLPFDAKESEIEELFSKHGVVKQVRL-VTNRAGKPKGY 213
>SB_53534| Best HMM Match : RRM_1 (HMM E-Value=1e-18)
Length = 268
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = +1
Query: 424 SRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLRT 579
S+ + V G + TTE ++ F +YG V + K+ + + V +G+A T +
Sbjct: 7 SKRIFVKGFNRETTESELRAFFEEYGVVKESKI-VRDKHGVSKGYAFITFES 57
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 540 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
G RG+CFV F+ EDA+ A + R + VD++
Sbjct: 428 GEPRGYCFVEFKKKEDARKALRGLNKKIVLSRALVVDWA 466
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 641
V+ D T RSRGF F+ F+D + + N E+DG+++
Sbjct: 139 VMRDPVTKRSRGFGFLTFKDPKAVDVVLNS-GAQELDGKKM 178
>SB_52333| Best HMM Match : RRM_1 (HMM E-Value=2.3e-16)
Length = 76
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 534 KTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 665
K + R + FVYF E A A + G IDG ++ V +I Q
Sbjct: 30 KVRKIRDYGFVYFAKRESAVQAIDGINGAYIDGCKLEVSLAIPQ 73
>SB_971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 783
Score = 29.1 bits (62), Expect = 3.9
Identities = 8/32 (25%), Positives = 21/32 (65%)
Frame = +3
Query: 561 FVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
++ ++ ++ A +A E G ++ RR+R+D++
Sbjct: 357 YILYDSLDAASVAAREMRGFQMGDRRLRIDFA 388
>SB_54892| Best HMM Match : DHH (HMM E-Value=0.057)
Length = 384
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +1
Query: 448 LSLYTTEQQINHIFS-KYGPVAKCKL*LMQRRAVPEGFASFTLRTW 582
+S T + Q+NHI+ Y ++K K + PE FA+ T+R+W
Sbjct: 225 VSAVTIKCQVNHIYGCTYNNLSKNKDKQDKVPQAPEQFANSTIRSW 270
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 28.3 bits (60), Expect = 6.8
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI-DGRRIRVDYSITQRAHTPT 683
+V++++D G++RG+ FV + +DAK EI G+ I V S+ + PT
Sbjct: 102 EVRLMMDFN-GQNRGYAFVVYTSKDDAKRCVKTLNNYEIRKGKCIGVCSSVDKSLLVPT 159
>SB_18756| Best HMM Match : Sterol_desat (HMM E-Value=0)
Length = 672
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMED 587
K ++V D K+ +S+G+ FV F+D D
Sbjct: 245 KAKIVRDKKSNKSKGYGFVSFKDPND 270
>SB_20581| Best HMM Match : RRM_1 (HMM E-Value=1.7e-07)
Length = 97
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEI 626
V VV D T +RG C+V F A +A E G I
Sbjct: 52 VWVVKDKATKENRGVCYVKFVKASSAALACEEMDGRNI 89
>SB_1157| Best HMM Match : RRM_1 (HMM E-Value=1.2e-11)
Length = 248
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFE 575
V+V+ D +TGR RGF FV E
Sbjct: 110 VRVITDRETGRPRGFGFVTLE 130
>SB_39433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1291
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V D+ TG S+G+ F + D+ +A GM++ +++ V
Sbjct: 704 LVKDSATGLSKGYAFCEYVDLGITDVAIQGLNGMQLGDKKLIV 746
>SB_2588| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = -3
Query: 190 GPASTMSSGHHRRFRYRLARTVASPRTTSLSIRHSDVRS**ERQKRNITN 41
GP++ + GH RR R R ++ + T+L +DV + E+Q R+ N
Sbjct: 648 GPSTEYNEGHTRRSRRRYRKSAKNESQTTL--EKNDVEALTEKQPRSEQN 695
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,787,499
Number of Sequences: 59808
Number of extensions: 455520
Number of successful extensions: 1117
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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