Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30260
(732 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 50 2e-06
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 49 3e-06
At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)... 48 5e-06
At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)... 48 5e-06
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 48 5e-06
At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putat... 48 6e-06
At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putat... 48 6e-06
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 48 8e-06
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 48 8e-06
At5g06000.1 68418.m00665 eukaryotic translation initiation facto... 46 3e-05
At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putat... 46 3e-05
At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast, ... 45 6e-05
At5g61030.1 68418.m07659 RNA-binding protein, putative similar t... 44 1e-04
At3g11400.1 68416.m01390 eukaryotic translation initiation facto... 44 1e-04
At5g06210.1 68418.m00693 RNA-binding protein, putative contains ... 44 1e-04
At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast, ... 44 1e-04
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 43 2e-04
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 43 2e-04
At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 42 3e-04
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 42 3e-04
At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)... 42 3e-04
At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)... 42 3e-04
At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /... 42 4e-04
At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /... 42 4e-04
At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing ... 42 4e-04
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 42 4e-04
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 42 6e-04
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 42 6e-04
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 41 7e-04
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 41 0.001
At3g08000.1 68416.m00977 RNA-binding protein, putative similar t... 40 0.001
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 40 0.002
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 40 0.002
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, ... 40 0.002
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 39 0.003
At2g37510.1 68415.m04600 RNA-binding protein, putative similar t... 39 0.003
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 39 0.003
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 38 0.005
At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing ... 38 0.005
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 38 0.007
At4g35785.1 68417.m05082 transformer serine/arginine-rich ribonu... 38 0.007
At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing ... 38 0.007
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 38 0.009
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 38 0.009
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 38 0.009
At4g35785.2 68417.m05083 transformer serine/arginine-rich ribonu... 37 0.012
At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing ... 37 0.012
At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putat... 37 0.012
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 37 0.012
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 37 0.012
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 37 0.016
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 36 0.021
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 36 0.021
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 36 0.021
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 36 0.021
At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing ... 36 0.021
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 36 0.028
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.037
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.037
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 36 0.037
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 35 0.048
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 35 0.064
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 35 0.064
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 34 0.085
At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing ... 34 0.085
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 34 0.085
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 34 0.085
At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing ... 34 0.085
At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing ... 34 0.085
At1g07350.1 68414.m00783 transformer serine/arginine-rich ribonu... 34 0.085
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 33 0.15
At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing ... 33 0.15
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 33 0.15
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 33 0.15
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 33 0.15
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 33 0.15
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 33 0.20
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 33 0.20
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 33 0.20
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 33 0.26
At5g51300.2 68418.m06360 splicing factor-related contains simila... 32 0.34
At5g51300.1 68418.m06359 splicing factor-related contains simila... 32 0.34
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 32 0.34
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 32 0.34
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 32 0.34
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 32 0.34
At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein... 32 0.34
At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein... 32 0.34
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.60
At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing ... 31 0.60
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 31 0.60
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 31 0.60
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 31 0.60
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea... 31 0.60
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea... 31 0.60
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 31 0.60
At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP... 31 0.79
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 31 0.79
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 31 1.0
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 31 1.0
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 31 1.0
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 1.0
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 31 1.0
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 30 1.4
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 30 1.4
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 30 1.4
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 30 1.4
At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing ... 30 1.4
At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing ... 30 1.4
At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing ... 30 1.4
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 30 1.8
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 29 2.4
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 2.4
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 29 2.4
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 29 2.4
At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing ... 29 3.2
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 29 3.2
At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a) ide... 29 3.2
At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a) ide... 29 3.2
At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a) ide... 29 3.2
At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing ... 29 3.2
At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profi... 29 3.2
At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing ... 29 3.2
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ... 29 3.2
At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit... 29 4.2
At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit... 29 4.2
At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit... 29 4.2
At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 / 4-coumaroyl... 29 4.2
At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 / 4-coumaroyl... 29 4.2
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 29 4.2
At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing ... 28 5.6
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 28 5.6
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 28 7.3
At1g07350.2 68414.m00784 transformer serine/arginine-rich ribonu... 28 7.3
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 27 9.7
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 27 9.7
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 27 9.7
At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit... 27 9.7
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 49.6 bits (113), Expect = 2e-06
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 668
++++D +TGRSRGF FV F E+A A + G ++ GRRIRV+Y+ T+R
Sbjct: 64 KIIVDRETGRSRGFAFVTFTSTEEASNAM-QLDGQDLHGRRIRVNYA-TER 112
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +1
Query: 439 VFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFT 570
V G+S T E + FSKYG V K+ + + GFA T
Sbjct: 38 VGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVT 81
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 489 F*VWTRCK-VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
F V++ C +V+ D KTGRSRGF FV F + +DA+ A NE G + R+IR +++
Sbjct: 164 FSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
>At4g13850.2 68417.m02146 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 153
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+V++D +TGRSRGF FV F D A A +E G E++GR IRV+
Sbjct: 65 KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109
>At4g13850.1 68417.m02145 glycine-rich RNA-binding protein (GRP2)
glycine-rich RNA binding protein 2 AtGRP2 [Arabidopsis
thaliana] GI:2826811
Length = 158
Score = 48.4 bits (110), Expect = 5e-06
Identities = 23/45 (51%), Positives = 31/45 (68%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+V++D +TGRSRGF FV F D A A +E G E++GR IRV+
Sbjct: 65 KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 48.4 bits (110), Expect = 5e-06
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +3
Query: 489 F*VWTRCK-VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
F V+ C +V+ D KTGRSRGF FV F + +DA+ A +E TG + R+IR +++
Sbjct: 159 FSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +1
Query: 421 PSRCLGVF--GLSLYTTEQQINHIFSKYGPVAKCKL 522
PS C V+ + + TE + +F+ GPV CKL
Sbjct: 50 PSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKL 85
>At3g23830.2 68416.m02996 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
V+ D +TGRSRGF FV F + A A E G E++GR+IRV+ + T+R+ P
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA-TERSSAP 118
>At3g23830.1 68416.m02995 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana]; contains Pfam profile: PF00076
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 136
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
V+ D +TGRSRGF FV F + A A E G E++GR+IRV+ + T+R+ P
Sbjct: 66 VIADRETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLA-TERSSAP 118
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V+ D KTGRSRGF FV F + +DA+ A NE G + R+IR +++
Sbjct: 182 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 421 PSRCLGVFGLSLYT--TEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLRTWKMLR 594
P+ C V+ +++T TE + IF+ GP+ CK L+++ GF + R +
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCK--LIRKDKSSYGFVHYFDRRCASMA 116
Query: 595 LQRMN 609
+ +N
Sbjct: 117 IMTLN 121
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V+ D KTGRSRGF FV F + +DA+ A NE G + R+IR +++
Sbjct: 178 RVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 224
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Frame = +1
Query: 421 PSRCLGVFGLSLYT--TEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLRTWKMLR 594
P+ C V+ +++T TE + IF+ GP+ CK L+++ GF + R +
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCK--LIRKDKSSYGFVHYFDRRCASMA 116
Query: 595 LQRMN 609
+ +N
Sbjct: 117 IMTLN 121
>At5g06000.1 68418.m00665 eukaryotic translation initiation factor
3G, putative / eIF3g, putative similar to eukaryotic
translation initiation factor 3g [Arabidopsis thaliana]
GI:12407751; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 276
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/69 (40%), Positives = 36/69 (52%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
TRC V ID KT SRGF FV F EDA+ A N+ G D +RV++S + P
Sbjct: 201 TRC--HVAIDQKTSMSRGFGFVSFVSREDAQRAINKLNGYGYDNLILRVEWSTPKTQLDP 258
Query: 681 TRASTWANL 707
+ + NL
Sbjct: 259 FSFADYNNL 267
>At2g16260.1 68415.m01862 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein from {Daucus
carota} SP|Q03878, {Sinapis alba} SP|P49311, {Brassica
napus} SP|Q05966, {Arabidopsis thaliana} SP|Q03251;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 185
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 641
+++ID +TGRS+GF FV F+D + + A + G E+DGR I
Sbjct: 74 KIIIDRETGRSKGFRFVTFKDEDSMRTAIDRMNGQELDGRNI 115
>At2g37220.1 68415.m04566 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
SP|Q43349 29 kDa ribonucleoprotein, chloroplast
precursor (RNA-binding protein cp29) {Arabidopsis
thaliana}
Length = 289
Score = 44.8 bits (101), Expect = 6e-05
Identities = 20/46 (43%), Positives = 29/46 (63%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V+V+ D TGRSRGF FV + + + A + G E+DGR +RV+
Sbjct: 120 VEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/46 (36%), Positives = 30/46 (65%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+ +V+ D +GRS+GF FV ++ ++ + A G ++DGR+IRV
Sbjct: 232 EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRV 277
>At5g61030.1 68418.m07659 RNA-binding protein, putative similar to
RNA-binding protein from [Solanum tuberosum]
GI:15822705, [Nicotiana tabacum] GI:15822703, [Nicotiana
sylvestris] GI:624925; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 309
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V++D +TGRSRGF FV F E A A G ++ GR ++V+Y+
Sbjct: 70 RVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYA 116
>At3g11400.1 68416.m01390 eukaryotic translation initiation factor
3G / eIF3g nearly identical to eukaryotic translation
initiation factor 3g [Arabidopsis thaliana] GI:12407751
Length = 294
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/49 (46%), Positives = 30/49 (61%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V V ID KTG SRGF FV F EDA+ A N+ G D +RV+++
Sbjct: 241 RVYVAIDQKTGVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289
>At5g06210.1 68418.m00693 RNA-binding protein, putative contains
similarity to RNA-binding protein from [Nicotiana
tabacum] GI:15822703, [Nicotiana sylvestris] GI:624925,
[Solanum tuberosum] GI:15822705; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 146
Score = 43.6 bits (98), Expect = 1e-04
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+ Q+V+D + RS+GF FV F ++A+ A E G +++GR I VDY+
Sbjct: 62 EAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYA 110
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +1
Query: 433 LGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQR---RAVPEGFASF 567
L + GLS TTEQ ++ FSK G V + ++ +M R R+ GF +F
Sbjct: 36 LFIGGLSFCTTEQGLSEAFSKCGQVVEAQI-VMDRVSDRSKGFGFVTF 82
>At3g52380.1 68416.m05757 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
chloroplast RNA-binding protein (cp33) GB:BAA06523
(Arabidopsis thaliana) (Plant Mol. Biol. 27 (3), 529-539
(1995)); contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+V+ + TGRSRGF F+ FE E+ + A G+E++GR +R++
Sbjct: 249 KVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLN 293
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/47 (42%), Positives = 28/47 (59%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 653
VQ+V D T RSRGF FV +E+AK A +I GR ++V++
Sbjct: 145 VQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQIGGRTVKVNF 191
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+ +VV D +TGRSRGF FV D+++ A + G ++GR IRV+
Sbjct: 272 EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVN 318
Score = 33.1 bits (72), Expect = 0.20
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRA 689
+V+ + +T +SRGF FV +++A+ A + +++GR + V+ R P RA
Sbjct: 180 EVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVN-KAAPRGSRPERA 236
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/57 (33%), Positives = 34/57 (59%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTR 686
++V D +TG+ +G+ F ++D E A A+ EI+GR++RVD++ + TR
Sbjct: 39 RLVTDRETGKPKGYGFCEYKDEETALSARRNLQSYEINGRQLRVDFAENDKGTDKTR 95
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 403 LLENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGF 558
+ +++ RC+ V + TE+Q+ I + GPV +L + P+G+
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGY 52
>At4g39260.3 68417.m05559 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 92
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+++ D ++GRSRGF FV F+D + + A E G E+DGR I V+
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At4g39260.2 68417.m05558 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 126
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+++ D ++GRSRGF FV F+D + + A E G E+DGR I V+
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+++ D ++GRSRGF FV F+D + + A E G E+DGR I V+
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVN 80
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/47 (42%), Positives = 30/47 (63%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+ +VV+D +GRSRGF F+ F++ + A GM++DGR I VD
Sbjct: 35 EAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVD 81
>At2g21660.2 68415.m02578 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 159
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+++ D +TGRSRGF FV F+D + K A G ++DGR I V+
Sbjct: 38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>At2g21660.1 68415.m02577 glycine-rich RNA-binding protein (GRP7)
SP|Q03250 Glycine-rich RNA-binding protein 7
{Arabidopsis thaliana}
Length = 176
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+++ D +TGRSRGF FV F+D + K A G ++DGR I V+
Sbjct: 38 KIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVN 82
>At3g53460.2 68416.m05901 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 334
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+ +V+ D +GRS+GF FV ++ + A N G ++DGR+IRV
Sbjct: 277 EARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 322
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V+V+ D TGRSRGF FV + + A + G E +GR +RV+
Sbjct: 128 VEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
>At3g53460.1 68416.m05900 29 kDa ribonucleoprotein, chloroplast /
RNA-binding protein cp 29 nearly identical to SP|Q43349
29 kDa ribonucleoprotein, chloroplast precursor
(RNA-binding protein cp29) {Arabidopsis thaliana}
Length = 342
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+ +V+ D +GRS+GF FV ++ + A N G ++DGR+IRV
Sbjct: 285 EARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRV 330
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/46 (41%), Positives = 27/46 (58%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V+V+ D TGRSRGF FV + + A + G E +GR +RV+
Sbjct: 128 VEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
>At3g52150.1 68416.m05724 RNA recognition motif (RRM)-containing
protein similar to chloroplast RNA-binding protein cp33
[Arabidopsis thaliana] GI:681912; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 253
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
KVQV+ D +GRSR F F + +EDA + G ++GR I+V+ + A +P
Sbjct: 104 KVQVMYDKYSGRSRRFGFATMKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSP 160
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/45 (42%), Positives = 27/45 (60%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+VV D TGRSRG+ FV + + + A G E++GR IRV+
Sbjct: 207 RVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVN 251
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/48 (37%), Positives = 30/48 (62%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
V+V+ + TG+SRGF FV ++ED I + G E GR ++V+++
Sbjct: 114 VEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNFA 161
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 671
+VVID+ TGRS+G+ FV F D + A E G R++RV + +RA
Sbjct: 233 KVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 41.5 bits (93), Expect = 6e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRA 671
+VVID+ TGRS+G+ FV F D + A E G R++RV + +RA
Sbjct: 244 KVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+V +V D T + +G+ F+ + D K A + G +IDGRR+ VD
Sbjct: 166 RVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYKQADGQKIDGRRVLVD 212
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 421 PSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
P + L V L+ ++E +I F YGP+ + L Q P+G+A
Sbjct: 136 PYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTDQLTNKPKGYA 182
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAH 674
V ++ D TG+S+GF F+ +ED +A + G + GR I+VD+ + H
Sbjct: 65 VNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNLNGALVLGRTIKVDHCGAYKKH 118
>At3g08000.1 68416.m00977 RNA-binding protein, putative similar to
RNA-binding protein from [Nicotiana tabacum]
GI:15822703, [Nicotiana sylvestris] GI:624925; contains
Pfam profile: PF00076 RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain)
Length = 143
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/50 (38%), Positives = 31/50 (62%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI 659
+V++ D +GRSRGF FV F + DA AK+ G + GR +R+ +++
Sbjct: 69 EVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDAMDGKGLLGRPLRISFAL 118
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 412 NTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL 522
+ +PS L + GLS EQ + FS +G VA+ ++
Sbjct: 36 SASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRI 72
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+VV+DA TGRS+G+ FV F D + A E G++ R +R+
Sbjct: 230 KVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+VV+DA TGRS+G+ FV F D + A E G++ R +R+
Sbjct: 228 KVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+VV+DA TGRS+G+ FV F D + A E G++ R +R+
Sbjct: 228 KVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 39.5 bits (88), Expect = 0.002
Identities = 21/49 (42%), Positives = 29/49 (59%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI 659
V+V D T RS G+ +V + +DA A NE M ++GR IRV YS+
Sbjct: 74 VRVCRDMTTRRSLGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSV 122
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = +3
Query: 489 F*VWTRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGR 635
F V T C V++ G+S+GF FV FE+ +DA A + G D +
Sbjct: 247 FGVTTSC---VIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDK 292
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
33 KDA RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana
sylvestris]
Length = 293
Score = 39.5 bits (88), Expect = 0.002
Identities = 22/59 (37%), Positives = 30/59 (50%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHT 677
T V+V + +TG SRG +V + AKIA G E+ GR +RV YS+ T
Sbjct: 133 TVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGT 191
Score = 31.9 bits (69), Expect = 0.45
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
T +V+ D KTGR+R F F+ F E+ A + G + +GRRI V
Sbjct: 237 TIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIV 284
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+VV D +TGRSRGF FV + + +A G ++GR I+V+
Sbjct: 237 RVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
Score = 36.3 bits (80), Expect = 0.021
Identities = 19/57 (33%), Positives = 32/57 (56%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTR 686
+V+ + T +SRGF FV +E+A+ A + E++GRR+ V+ + R P R
Sbjct: 143 EVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRA-APRGSRPER 198
>At2g37510.1 68415.m04600 RNA-binding protein, putative similar to
SP|P10979 Glycine-rich RNA-binding, abscisic
acid-inducible protein {Zea mays}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 142
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+V+ D +GRS+GF FV + +EDA+ AK E +DG I VD
Sbjct: 64 RVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVD 108
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAS 692
VQV D +TG +GF FV F +EDA+ A N +EI GR I+V ++T + P
Sbjct: 314 VQVPRD-ETGLCKGFGFVQFARLEDARNALNLNGQLEIAGRAIKVS-AVTDQTEVPEAGQ 371
Query: 693 T 695
T
Sbjct: 372 T 372
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/46 (41%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG-MEIDGRRIRV 647
VQ+ +D +TG+ +GF F+ F +E +K A+ G +EI GR I+V
Sbjct: 294 VQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKV 339
>At1g20880.1 68414.m02615 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
is the location of EST 197B1T7 , gb|AA597386
Length = 274
Score = 38.3 bits (85), Expect = 0.005
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
V+ D TGRS+G+ FV F D E A+ A + T + IDGRR + + R+ P
Sbjct: 55 VITDKNTGRSKGYGFVTFRDPEAARRACVDPTPI-IDGRRANCNLASLGRSRPP 107
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 37.9 bits (84), Expect = 0.007
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 653
K+ + +D T GFCFV F ED + A +G +D R IRVD+
Sbjct: 62 KIIMGLDKNTKTPCGFCFVLFYSREDTEDAVKYISGTILDDRPIRVDF 109
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 448 LSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGF 558
+S YTTE+Q+ +FS+ G + K + L + P GF
Sbjct: 41 VSFYTTEEQLYELFSRAGEIKKIIMGLDKNTKTPCGF 77
>At4g35785.1 68417.m05082 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 140
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/64 (37%), Positives = 31/64 (48%)
Frame = +1
Query: 394 RVRLLENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTL 573
R R E P L V GLS T++ + F+K G VA C L + R V GFA T+
Sbjct: 60 RSRGSEVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTM 119
Query: 574 RTWK 585
+ K
Sbjct: 120 SSLK 123
>At1g76460.1 68414.m08893 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 285
Score = 37.9 bits (84), Expect = 0.007
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
V+ D TGRS+G+ FV F D E A+ A + T + IDGRR + + R P
Sbjct: 55 VIADKNTGRSKGYGFVTFRDPEAARRACADPTPI-IDGRRANCNLASLGRPRPP 107
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 528 DAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
D +TG SRGF FV ++ ++A A G +DGR I V ++
Sbjct: 50 DRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 528 DAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
D +TG SRGF FV ++ ++A A G +DGR I V ++
Sbjct: 50 DRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGREITVQFA 92
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 37.5 bits (83), Expect = 0.009
Identities = 21/65 (32%), Positives = 33/65 (50%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAST 695
+VV+D TGRS+G+ FV F D + A E G R +R+ + + A P + +
Sbjct: 185 KVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNA-LPMQPAM 243
Query: 696 WANLQ 710
+ N Q
Sbjct: 244 YQNTQ 248
>At4g35785.2 68417.m05083 transformer serine/arginine-rich
ribonucleoprotein, putative similar to transformer-SR
ribonucleoprotein [Nicotiana tabacum]
gi|1781299|emb|CAA70700
Length = 141
Score = 37.1 bits (82), Expect = 0.012
Identities = 22/59 (37%), Positives = 29/59 (49%)
Frame = +1
Query: 409 ENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLRTWK 585
E P L V GLS T++ + F+K G VA C L + R V GFA T+ + K
Sbjct: 66 EVENPGTTLYVTGLSTRVTDKDLEAHFAKEGKVASCFLVMEPRTRVSRGFAFVTMSSLK 124
>At4g09040.1 68417.m01491 RNA recognition motif (RRM)-containing
protein low similarity to enhancer binding protein-1;
EBP1 [Entamoeba histolytica] GI:8163877, SP|P19682 28
kDa ribonucleoprotein, chloroplast precursor (28RNP)
{Nicotiana sylvestris}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 304
Score = 37.1 bits (82), Expect = 0.012
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 534 KTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHT 677
K R+RG F+ E+A A E +GRR++VDY+ T++ T
Sbjct: 129 KKERNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKT 176
>At1g18630.1 68414.m02322 glycine-rich RNA-binding protein, putative
similar to glycine-rich RNA-binding protein from
{Sorghum bicolor} SP|Q99070, GI:1778373 from [Pisum
sativum]; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 155
Score = 37.1 bits (82), Expect = 0.012
Identities = 19/43 (44%), Positives = 26/43 (60%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
VV+D ++G SRGF FV ++ +E A A E+DGR I V
Sbjct: 67 VVLDRESGLSRGFGFVTYDSIEVANNAMQAMQNKELDGRIIGV 109
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAS 692
+VVID TGR++G+ FV F D + A E G+ R +R+ + +++ T R S
Sbjct: 186 KVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDS 244
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/59 (33%), Positives = 32/59 (54%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAS 692
+VVID TGR++G+ FV F D + A E G+ R +R+ + +++ T R S
Sbjct: 186 KVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDS 244
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 36.7 bits (81), Expect = 0.016
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
V+ D T RSRGF FV + +A+ A + G E++GRR+ V
Sbjct: 34 VMRDRYTDRSRGFGFVTYSSHSEAEAAVSGMDGKELNGRRVSV 76
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/47 (34%), Positives = 29/47 (61%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+ +++ D++T R +GF F+ F+ +DA+ A G +DGR I V+
Sbjct: 35 EARLIRDSETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVE 81
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 433 LGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFT 570
L V LS YTT+Q + +FS +G + + +L P+GF T
Sbjct: 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFIT 54
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = +3
Query: 534 KTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+ GRS+GF FV F + E++K AK G +DG+ I V
Sbjct: 339 ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVV 376
Score = 32.7 bits (71), Expect = 0.26
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
VV+ GRSRGF FV F + E+AK A G+++ +++ V
Sbjct: 232 VVMRDGMGRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFV 274
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +1
Query: 403 LLENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFT 570
LL + + S L V G+S +TE+ + FS+YG V K + + + R P+GFA T
Sbjct: 13 LLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVT 68
Score = 35.5 bits (78), Expect = 0.037
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
KV V++D R +GF +V F E+A+ A E +DGR + +D + + + P
Sbjct: 49 KVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILDTTKAAKHNPP 105
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/52 (38%), Positives = 27/52 (51%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
T V+ D KTG S + F+ FE+ E + A + ID RRI VD+S
Sbjct: 268 TVVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFS 319
>At1g13690.1 68414.m01609 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 177
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 668
V+ +D + R F FV F + EDA A + G E+ GR + V+Y++ ++
Sbjct: 42 VKTPLDQANQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPEK 93
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/54 (35%), Positives = 34/54 (62%)
Frame = +3
Query: 507 CKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 668
CKV + + TGRS+G+ FV FE E A+ A ++ GM ++ +++ V + I ++
Sbjct: 165 CKVAMDV---TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQ 215
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 519 VVIDAKTG-RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI-TQRAHTPTRAS 692
V ID K R G+ FV F+D DA+ A + G + DG R+RV+ + +R+ TR S
Sbjct: 34 VQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGS 93
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 424 SRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
SR + V L E+++ +FSKYGPV + L + R P G+A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPR---PPGYA 48
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 519 VVIDAKTG-RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI-TQRAHTPTRAS 692
V ID K R G+ FV F+D DA+ A + G + DG R+RV+ + +R+ TR S
Sbjct: 34 VQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGS 93
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 424 SRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
SR + V L E+++ +FSKYGPV + L + R P G+A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPR---PPGYA 48
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.5 bits (78), Expect = 0.037
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = +3
Query: 519 VVIDAKTG-RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI-TQRAHTPTRAS 692
V ID K R G+ FV F+D DA+ A + G + DG R+RV+ + +R+ TR S
Sbjct: 34 VQIDLKVPPRPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGS 93
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 424 SRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
SR + V L E+++ +FSKYGPV + L + R P G+A
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPR---PPGYA 48
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 35.1 bits (77), Expect = 0.048
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYF--EDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRA 689
Q++ D TGRSRGF FV + EDM D +AK +E+ G ++ + + ++ ++ T
Sbjct: 160 QIMRDHSTGRSRGFGFVTYESEDMVDHLLAKG--NRIELSGTQVEIKKAEPKKPNSVTTP 217
Query: 690 S 692
S
Sbjct: 218 S 218
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 653
V+++ + +T +S G+ +V+F EDA+ A G DGR I V +
Sbjct: 106 VKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNGKFFDGRFILVKF 152
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 34.7 bits (76), Expect = 0.064
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 412 NTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
+ TPS + V GLS+ +TE+ + I +++GP+ ++ Q + GFA
Sbjct: 293 SATPSATVVVKGLSMKSTEEDLYQILAEWGPLHHVRVIREQNSGISRGFA 342
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAK--IAKNECTGMEIDGRRIRVDYS 656
V+V+ + +G SRGF F+ F ++ A+ + + E G+ +DGR++ YS
Sbjct: 327 VRVIREQNSGISRGFAFIDFPTVDAARTMMDRIEHDGIVLDGRKLMFHYS 376
Score = 33.9 bits (74), Expect = 0.11
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDA--KIAKNECTGMEIDGRRIRVDYS 656
+++V D T SRGF FV+F +EDA + T +E +G+ +RV Y+
Sbjct: 487 LRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNRTALERNGKILRVAYA 536
Score = 28.3 bits (60), Expect = 5.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 406 LENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
+ T P+ L V GL E+ + + FSK+ P+ +L + V GFA
Sbjct: 451 ISETGPTHVLVVRGLDEDADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFA 502
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAS 692
+++ D +T R +GF F+ FE +DA+ A G ++GR I V+ + A T + S
Sbjct: 96 RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGKIVNGRLIFVETAKEVEAPTTSLKS 154
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = +1
Query: 385 LGDRVRLLENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFAS 564
+ R RL+ T + C+ GLS YTT+Q + +F+ + + K Q+ P+GF
Sbjct: 58 ISKRRRLIGGKTLT-CVSNSGLSAYTTDQSLRQLFAPFARLIK-----DQQTQRPKGFGF 111
Query: 565 FTLRT 579
T +
Sbjct: 112 ITFES 116
>At2g46780.1 68415.m05836 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 304
Score = 34.3 bits (75), Expect = 0.085
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGME--IDGRRIRVDYSI--TQRAHTPT 683
V+ D TGRS+G+ FV F ++A+ A C M IDGRR + + Q+ PT
Sbjct: 53 VITDKNTGRSKGYGFVTF---KEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPT 108
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 34.3 bits (75), Expect = 0.085
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 522 VIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTP 680
+I K G++RGF FV E+A+ A ++ ++ GR I V ++ + TP
Sbjct: 126 IIRQKDGKNRGFAFVTMASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTP 178
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
V+ D +GRS+G+ FV F + E A+ A + T + IDGRR
Sbjct: 44 VITDKASGRSKGYGFVTFREAEAARSACVDATPV-IDGRR 82
>At1g22910.2 68414.m02861 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 242
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
V+ D +GRS+G+ FV F + E A+ A + T + IDGRR
Sbjct: 44 VITDKASGRSKGYGFVTFREAEAARSACVDATPV-IDGRR 82
>At1g22910.1 68414.m02862 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 249
Score = 34.3 bits (75), Expect = 0.085
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
V+ D +GRS+G+ FV F + E A+ A + T + IDGRR
Sbjct: 44 VITDKASGRSKGYGFVTFREAEAARSACVDATPV-IDGRR 82
>At1g07350.1 68414.m00783 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 382
Score = 34.3 bits (75), Expect = 0.085
Identities = 19/57 (33%), Positives = 28/57 (49%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPT 683
V +V+D T SRGF F+ + + DA + GR I V+ + +R TPT
Sbjct: 104 VHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKARRRRGRTPT 160
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+ +V+ + TGRSRG+ FV F + A A + G E++G I V+
Sbjct: 59 EARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVN 105
>At4g36960.1 68417.m05238 RNA recognition motif (RRM)-containing
protein similar to SP|P48809 Heterogeneous nuclear
ribonucleoprotein 27C (hnRNP 48) {Drosophila
melanogaster}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM);
non-consensus TA donor splice site at exon 6
Length = 379
Score = 33.5 bits (73), Expect = 0.15
Identities = 20/41 (48%), Positives = 22/41 (53%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRI 641
V+ D TGRSRGF +V F ED AKN G G RI
Sbjct: 34 VMKDRSTGRSRGFGYVTFASAED---AKNALKGEHFLGNRI 71
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 33.5 bits (73), Expect = 0.15
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
V+V DA T S G+ +V + + +DA+ A + ++G+ IR+ YS
Sbjct: 75 VRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYS 122
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGR 635
VV+ G+SR F FV FE+ EDA A G + D +
Sbjct: 255 VVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDK 293
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 439 VFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFT 570
V GLS TE+Q+ F +YG + +C++ + + P GF T
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFIT 59
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
T C Q+++ TGR RGF F+ F D A A G E+ + I V+
Sbjct: 39 TEC--QIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVN 86
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 33.5 bits (73), Expect = 0.15
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +1
Query: 439 VFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFT 570
V GLS TE+Q+ F +YG + +C++ + + P GF T
Sbjct: 16 VGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFIT 59
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
T C Q+++ TGR RGF F+ F D A A G E+ + I V+
Sbjct: 39 TEC--QIMVGRDTGRPRGFGFITFTDRRGADDAIKHMHGRELGNKVISVN 86
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 33.5 bits (73), Expect = 0.15
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 519 VVIDAKTG-RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPT 683
V ID K R G+ FV FED DA A G + DG R+RV+ + R +P+
Sbjct: 34 VDIDLKIPPRPPGYAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIAHGGRRFSPS 89
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 33.1 bits (72), Expect = 0.20
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+VV D TGRS+G+ FV F + + A E G+ R +R+
Sbjct: 147 KVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRI 190
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAS 692
+VV D TGRS+G+ FV F D + A E G R +R + ++ T AS
Sbjct: 204 KVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPAS 262
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 33.1 bits (72), Expect = 0.20
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = +3
Query: 537 TGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 665
TG SRG+ FV +E ++ A + IDGR I VDY+ Q
Sbjct: 101 TGASRGYGFVEYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQ 143
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/30 (50%), Positives = 22/30 (73%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 599
+V+V + KTG+S+ F F+ FED E A+IA
Sbjct: 88 RVRVARNKKTGKSKHFGFIQFEDPEVAEIA 117
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V+ D TG S+G+ FV + D++ A A G +GR + V
Sbjct: 510 KVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 32.3 bits (70), Expect = 0.34
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V+ D TG S+G+ FV + D++ A A G +GR + V
Sbjct: 510 KVIKDRVTGLSKGYGFVKYADVQMANTAVQAMNGYRFEGRTLAV 553
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
Q++++ TGRSRGF F+ F D + E G + R I V+
Sbjct: 37 QIMLERDTGRSRGFGFITFADRRAMDESIREMHGRDFGDRVISVN 81
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +1
Query: 439 VFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFT 570
V GLS T++ + FS++G + C++ L + GF T
Sbjct: 11 VGGLSPEVTDRDLERAFSRFGDILDCQIMLERDTGRSRGFGFIT 54
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 32.3 bits (70), Expect = 0.34
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +3
Query: 552 GFCFVYFEDMEDAKIAKNECTGMEI--DGRRIRVDYSITQR 668
GF FVY ED DA+ A E GRR+RV+++ ++R
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEFGRKGRRLRVEWTKSER 76
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGR 635
V++D TG+S+G+ FV F ++ A +A E +IDGR
Sbjct: 106 VILDKVTGKSKGYGFVTFMHVDGALLALKE-PSKKIDGR 143
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGR 635
V++D TG+S+G+ FV F ++ A +A E +IDGR
Sbjct: 106 VILDKVTGKSKGYGFVTFMHVDGALLALKE-PSKKIDGR 143
>At3g07810.2 68416.m00956 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 495
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRASTW 698
++ D TGR+RGF FV F D A+I E IDGR + ++ + S
Sbjct: 37 ILKDRTTGRARGFGFVVFADPAVAEIVITE--KHNIDGRLVEAKKAVPRDDQNMVNRSNS 94
Query: 699 ANLQ 710
+++Q
Sbjct: 95 SSIQ 98
>At3g07810.1 68416.m00955 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative contains Pfam profile:
PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP
domain)
Length = 494
Score = 32.3 bits (70), Expect = 0.34
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRASTW 698
++ D TGR+RGF FV F D A+I E IDGR + ++ + S
Sbjct: 37 ILKDRTTGRARGFGFVVFADPAVAEIVITE--KHNIDGRLVEAKKAVPRDDQNMVNRSNS 94
Query: 699 ANLQ 710
+++Q
Sbjct: 95 SSIQ 98
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V+ + +G+S+G+C V F D A K+ G +GR V+Y+
Sbjct: 262 EVKFFDEKASGKSKGYCQVEFYDPVAASACKDALNGYPFNGRPCVVEYA 310
>At5g07290.1 68418.m00832 RNA recognition motif (RRM)-containing
protein Mei2-like protein - Arabidopsis thaliana,
EMBL:D86122
Length = 907
Score = 31.5 bits (68), Expect = 0.60
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 540 GRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR--AHTPTRASTWAN 704
G++RGF V + D+ A+ A G + GR++ + YSI + + + W N
Sbjct: 244 GKNRGFIMVSYYDIRAAQKAARALHGRLLRGRKLDIRYSIPKENPKENSSEGALWVN 300
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 VVIDAKTG-RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V ID K R G+ FV FED DA A G + DG +RV+
Sbjct: 34 VQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 424 SRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
SR + V L E+++ +FSKYGPV + L + R P G+A
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPR---PPGYA 48
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 31.5 bits (68), Expect = 0.60
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +3
Query: 519 VVIDAKTG-RSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
V ID K R G+ FV FED DA A G + DG +RV+
Sbjct: 34 VQIDLKIPPRPPGYAFVEFEDARDADDAIYGRDGYDFDGHHLRVE 78
Score = 28.3 bits (60), Expect = 5.6
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +1
Query: 424 SRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFA 561
SR + V L E+++ +FSKYGPV + L + R P G+A
Sbjct: 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPR---PPGYA 48
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 546 SRGFCFVYFEDMEDAKIAKNECTGMEIDG 632
SRGF F+Y+ +E+A AK G ++G
Sbjct: 52 SRGFAFIYYRHVEEAVAAKEALQGANLNG 80
>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 347
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 608
VVID TG+++GF FV F+ + AK A E
Sbjct: 135 VVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 397 VRLLENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLR 576
V + R + V+GL TT + + +F YG + +C + + + +GF +
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 577 TWK 585
T K
Sbjct: 154 TRK 156
>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
identical to UBP1 interacting protein 1a [Arabidopsis
thaliana] GI:19574236; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM); based on cDNA of partial mRNA for UBP1
interacting protein 1a (uba1a) GI:19574235
Length = 343
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/30 (50%), Positives = 20/30 (66%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNE 608
VVID TG+++GF FV F+ + AK A E
Sbjct: 135 VVIDKATGKAKGFGFVMFKTRKGAKEALKE 164
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/63 (23%), Positives = 28/63 (44%)
Frame = +1
Query: 397 VRLLENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLR 576
V + R + V+GL TT + + +F YG + +C + + + +GF +
Sbjct: 94 VEAADRDVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFK 153
Query: 577 TWK 585
T K
Sbjct: 154 TRK 156
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 31.5 bits (68), Expect = 0.60
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQ 665
+ +V+D R +GF F+ +E E+A A G +DGR I V+ + T+
Sbjct: 106 MNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 421 PSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLRT 579
P L V GLS TTE + F ++G + + + + P+GFA T
Sbjct: 75 PKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYET 127
>At4g39260.4 68417.m05560 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 105
Score = 31.1 bits (67), Expect = 0.79
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 617
+++ D ++GRSRGF FV F+D + + A E G
Sbjct: 36 KIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V V+ D T +SRG FV + EDA A ++GR++ V
Sbjct: 85 RVTVLKDRHTRQSRGVAFVLYVSREDAAKAARSMDAKILNGRKLTV 130
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 552 GFCFVYFEDMEDAKIAKNECTGMEI--DGRRIRVDYSITQR 668
GF FVY ED DA+ A E GRR+RV+++ R
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDR 76
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +3
Query: 552 GFCFVYFEDMEDAKIAKNECTGMEI--DGRRIRVDYSITQR 668
GF FVY ED DA+ A E GRR+RV+++ R
Sbjct: 36 GFAFVYMEDERDAEDAIRALDRFEYGRTGRRLRVEWTKNDR 76
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 30.7 bits (66), Expect = 1.0
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGR 635
VV+ G+S+GF FV FE+ +DA A G + D +
Sbjct: 59 VVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDK 97
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+V+++ D RS+G+ F+ F +DA +A +GR I +D
Sbjct: 68 EVKLIKDEAMKRSKGYAFIQFTSQDDAFLAIETMDRRMYNGRMIYID 114
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 555 FCFVYFEDMEDAKIAKNECTGMEIDGRRIRVD 650
+CFV FE DA+ A G +DG R+RV+
Sbjct: 47 YCFVEFEHSRDAEDAIKGRDGYNLDGCRLRVE 78
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 549 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
R + FV F D DA A+ G + DG RI V+ S
Sbjct: 44 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 79
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +3
Query: 549 RGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
R + FV F D DA A+ G + DG RI V+ S
Sbjct: 3 RDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 38
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +3
Query: 501 TRCKVQVVIDAKTGRSRGFCFVYFEDMEDAKIA 599
T C V V+D TGR++GF FV F+ + A+ A
Sbjct: 190 TECSV--VMDKDTGRAKGFGFVLFKTRKGARAA 220
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/73 (24%), Positives = 32/73 (43%)
Frame = +1
Query: 409 ENTTPSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL*LMQRRAVPEGFASFTLRTWKM 588
+ + R + V GL TT + + F YG + +C + + + +GF +T K
Sbjct: 157 DRDSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKG 216
Query: 589 LRLQRMNAPEWKL 627
R N PE ++
Sbjct: 217 ARAALKN-PEKRM 228
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPT 683
+V + + RGF FV F ED A G + GRRI ++ Q AH P+
Sbjct: 51 LVTNKGSDEHRGFAFVKFALQEDVNRAIELKNGSTVGGRRI----TVKQAAHRPS 101
Score = 30.3 bits (65), Expect = 1.4
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +3
Query: 534 KTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRASTWAN 704
+TG +GF FV F +DA A + G R I VD+++ + + +T A+
Sbjct: 367 ETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPKNIYNGAADATTAS 423
>At1g33470.2 68414.m04143 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 244
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
V+ D +GRS+G+ FV F D E A+ A + + IDGRR
Sbjct: 38 VITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPV-IDGRR 76
>At1g33470.1 68414.m04142 RNA recognition motif (RRM)-containing
protein similar to RRM-containing protein SEB-4 [Xenopus
laevis] GI:8895698; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 245
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
V+ D +GRS+G+ FV F D E A+ A + + IDGRR
Sbjct: 38 VITDKSSGRSKGYGFVTFCDPEAAQKACVDPAPV-IDGRR 76
>At1g22330.1 68414.m02793 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 146
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
++ D TG+S+G+ FV F D + A A + + IDGR+
Sbjct: 48 IITDKATGKSKGYGFVTFRDSDSATRAVADPNPV-IDGRK 86
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI 659
V++ DA +GRS + + F +DA +A + ++G+ IRV +S+
Sbjct: 53 VRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSV 101
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +3
Query: 537 TGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRAST 695
TG RGF FV + EDA A I GR I + ++ R TP T
Sbjct: 84 TGEPRGFGFVKYRYAEDAAEAMKRMNHKVIGGREIAIVFAEENR-KTPQEMRT 135
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +3
Query: 552 GFCFVYFEDMEDAK--IAKNECTGMEIDGRRIRVDYSITQRAHTPTRASTWANLQ 710
G+ FVYFED DA+ I K + + RR+ V+++ +R A +NL+
Sbjct: 36 GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGERGRPRGDAKAPSNLK 90
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYF--EDMEDAKIAKNECTGM 620
QV+ D +T RSRGF FV F E++ D ++K M
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDM 175
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYF--EDMEDAKIAKNECTGM 620
QV+ D +T RSRGF FV F E++ D ++K M
Sbjct: 139 QVIRDHETNRSRGFGFVIFDSEEVVDELLSKGNMIDM 175
>At5g54580.1 68418.m06794 RNA recognition motif (RRM)-containing
protein low similarity to RNA-binding protein RGP-3
[Nicotiana sylvestris] GI:1009363; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 156
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+VV D +G S+GF FV + +ED+ G +DG I +Y+
Sbjct: 86 KVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFLDGWVIFAEYA 132
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 421 PSRCLGVFGLSLYTTEQQINHIFSKYGPVAKCKL 522
PS L V GLS TT + + F+++G VA K+
Sbjct: 54 PSTNLFVSGLSKRTTSEGLRTAFAQFGEVADAKV 87
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V +V+D +T RSRG ++ + E A A E GR + +
Sbjct: 289 EVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSSFQGRLLHI 334
>At3g56860.3 68416.m06325 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 525 IDAKTGRSRGFCFVYFEDMEDAKIAKNE 608
+D TGR +GFC ++ E AK A E
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g56860.2 68416.m06324 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 525 IDAKTGRSRGFCFVYFEDMEDAKIAKNE 608
+D TGR +GFC ++ E AK A E
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g56860.1 68416.m06323 UBP1 interacting protein 2a (UBA2a)
identical to UBP1 interacting protein 2a [Arabidopsis
thaliana] GI:19682816; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 478
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 525 IDAKTGRSRGFCFVYFEDMEDAKIAKNE 608
+D TGR +GFC ++ E AK A E
Sbjct: 278 LDKYTGRPKGFCLFVYKSSESAKRALEE 305
>At3g54770.1 68416.m06060 RNA recognition motif (RRM)-containing
protein low similarity to RRM-containing protein SEB-4
[Xenopus laevis] GI:8895698; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 261
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
++ D T RS+G+ FV F+D + A A + T + I+GRR
Sbjct: 48 IISDKLTRRSKGYGFVTFKDAKAATRACEDSTPI-INGRR 86
>At3g18610.1 68416.m02365 nucleolin, putative contains Pfam profile:
PF00076 RNA recognition motif
Length = 636
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYS 656
+V V D +TG SRGF ++ D+ + +G EI G I V+ S
Sbjct: 511 RVHVPTDRETGASRGFAYI---DLTSGFDEALQLSGSEIGGGNIHVEES 556
>At1g78260.2 68414.m09119 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 271
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
++ D TG+S+G+ FV F + + A A + + IDGR+
Sbjct: 48 IITDKNTGKSKGYGFVTFRESDSATRAVADPNPV-IDGRK 86
>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
protein similar to RNA recognition motif-containing
protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 287
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRR 638
++ D TG+S+G+ FV F + + A A + + IDGR+
Sbjct: 48 IITDKNTGKSKGYGFVTFRESDSATRAVADPNPV-IDGRK 86
>At4g36690.3 68417.m05206 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 565
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V D +TG S+G+ F ++D+ IA G+++ + + V
Sbjct: 390 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.2 68417.m05207 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 542
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V D +TG S+G+ F ++D+ IA G+++ + + V
Sbjct: 390 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At4g36690.1 68417.m05205 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit [Nicotiana plumbaginifolia] GI:3850823
Length = 573
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRV 647
+V D +TG S+G+ F ++D+ IA G+++ + + V
Sbjct: 390 LVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTV 432
>At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 /
4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
Length = 490
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 650 IDADATTVNFHSGAFILCNLSIFHVLKVN 564
+D + + FHS ILC L +FH+ +N
Sbjct: 235 VDGENPNLYFHSDDVILCVLPMFHIYALN 263
>At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 /
4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
(4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
Length = 561
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 650 IDADATTVNFHSGAFILCNLSIFHVLKVN 564
+D + + FHS ILC L +FH+ +N
Sbjct: 235 VDGENPNLYFHSDDVILCVLPMFHIYALN 263
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 516 QVVIDAKTGRSRGFCFVYFE 575
Q++ D TGRSRGF FV F+
Sbjct: 187 QIMYDHHTGRSRGFGFVTFQ 206
>At5g12190.1 68418.m01430 RNA recognition motif (RRM)-containing
protein similar to SP|P52298 20 kDa nuclear cap binding
protein (NCBP 20 kDa subunit) (CBP20) (NCBP interacting
protein 1) (NIP1) {Homo sapiens}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 124
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 546 SRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDY 653
++G FV +ED+ DAK A + +G + R + V Y
Sbjct: 56 TKGTAFVVYEDIYDAKNAVDHLSGFNVANRYLIVLY 91
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/61 (32%), Positives = 30/61 (49%)
Frame = +3
Query: 510 KVQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQRAHTPTRA 689
+V V+ + TGR RGF FV F D A I + ID R + V ++++ +P
Sbjct: 34 QVTVMREKATGRPRGFGFVAFSD--PAVIDRVLQDKHHIDNRDVDVKRAMSREEQSPAGR 91
Query: 690 S 692
S
Sbjct: 92 S 92
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +1
Query: 433 LGVFGLSLYTTEQQINHIFSKYGPVAKCKL*L--MQRRAVPEGFASFTLRTWKMLRLQRM 606
L + GLS YT+E+ + F +G + + K+ + + +R+ F +T L+ M
Sbjct: 284 LFITGLSFYTSEKTLRAAFEGFGELVEVKIIMDKISKRSKGYAFLEYTTEEAAGTALKEM 343
Query: 607 N 609
N
Sbjct: 344 N 344
>At1g07350.2 68414.m00784 transformer serine/arginine-rich
ribonucleoprotein, putative similar to GB:Y09506 from
[Nicotiana tabacum] (Plant Mol. Biol. 35 (3), 261-269
(1997))
Length = 129
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSITQR 668
V +V+D T SRGF F+ + + DA + GR I V+ + Q+
Sbjct: 74 VHLVLDPWTRESRGFGFISMKSVGDANRCIRSLDHSVLQGRVITVEKFLWQQ 125
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +3
Query: 513 VQVVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTG 617
V+++ + +T +S G+ +V+F EDA+ A G
Sbjct: 87 VKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMNG 121
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAK---IAKNECTGMEIDGRRI--RVDYSITQRAHTP 680
++ D TGR+RGF F+ F D A+ + K+ G ++ ++ R D + +R +P
Sbjct: 46 IMRDRTTGRARGFGFIVFADPSVAERVIMDKHIIDGRTVEAKKAVPRDDQQVLKRHASP 104
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 466 EQQINHIFSKYGPVAKCKL*LMQRRAVPE--GFASFTLRTWKMLRLQRMN 609
++++ +FS+YG V CK+ +M + + GF +++ +L ++ MN
Sbjct: 341 DEKLKEMFSEYGNVTSCKV-MMNSQGLSRGFGFVAYSNPEEALLAMKEMN 389
>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
putative similar to U2 snRNP auxiliary factor, large
subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
Length = 589
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +3
Query: 519 VVIDAKTGRSRGFCFVYFEDMEDAKIAKNECTGMEIDGRRIRVDYSI 659
+V D +TG S+G+ F ++D IA G+++ + + V +I
Sbjct: 406 LVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAI 452
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,790,321
Number of Sequences: 28952
Number of extensions: 301341
Number of successful extensions: 1048
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -