Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30259
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...    65   2e-12
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...    65   2e-12
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    28   0.35 
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    26   1.4  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   1.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   5.6  
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    23   7.5  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    23   7.5  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    23   7.5  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    23   7.5  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    23   9.9  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    23   9.9  
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p...    23   9.9  

>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 65.3 bits (152), Expect = 2e-12
 Identities = 28/52 (53%), Positives = 41/52 (78%)
 Frame = +3

Query: 21  LREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
           ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ +  KL+ELH
Sbjct: 181 MKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLELH 232


>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score = 64.9 bits (151), Expect = 2e-12
 Identities = 27/56 (48%), Positives = 43/56 (76%)
 Frame = +3

Query: 9   TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
           ++  +RE+V KLIP+ I ++IE+A   I+PL++V +RKVK+LK P+ +  KL+ELH
Sbjct: 177 SSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLELH 232


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 27.9 bits (59), Expect = 0.35
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -3

Query: 168 PSTSRSRNGASSTLSPFGCKHRAE 97
           PSTSR RN   S LS    KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 10/39 (25%), Positives = 21/39 (53%)
 Frame = +3

Query: 3   DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 119
           D     +R++ ++ +   +A ++   C GI  +R+VC R
Sbjct: 392 DALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 101 ARCLHPKGESVEEAPFRDLEVD 166
           +RCL    ++V+EA  RDLE++
Sbjct: 22  SRCLGFAAQNVDEANLRDLEIE 43


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = -3

Query: 165 STSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 25
           S + S N +S  L       R EG     PSR   QWS +S+    P
Sbjct: 330 SAATSGNISSPALFDSELGARPEGSVAIEPSRVLLQWSSQSSSHTIP 376


>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 206 GFPLASTAFAVKFHQLRDLET 144
           G PLA  AF   +H   D+ET
Sbjct: 54  GAPLAKVAFRNPYHYRTDVET 74


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 206 GFPLASTAFAVKFHQLRDLET 144
           G PLA  AF   +H   D+ET
Sbjct: 54  GAPLAKVAFRNPYHYRTDVET 74


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 107 IAQRVDAMAGLLDVLGNGVRNQLVH 33
           ++QR+ +   LLD+LG  V  +L H
Sbjct: 795 VSQRLISPTQLLDILGKSVNIKLEH 819


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 23.4 bits (48), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 206 GFPLASTAFAVKFHQLRDLET 144
           G PLA  AF   +H   D+ET
Sbjct: 54  GAPLAKVAFRNPYHYRTDVET 74


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 168 PSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCP 64
           PSTSR    ++ST+SP      A    HG   R P
Sbjct: 376 PSTSRDYPFSASTISP-STPFSAYSSSHGIHQRIP 409


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 110 NIAQRVDAMAGLLDVLGNGVRN 45
           N +  + A AG+L  +GNG RN
Sbjct: 471 NSSNDLHAQAGMLKNVGNGPRN 492


>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 23.0 bits (47), Expect = 9.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 155 DLETGPLQHFHLSDANIAQRVDAMA 81
           D++TG LQH + S   I  + D++A
Sbjct: 325 DMDTGLLQHTYPSSVQILFQEDSVA 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 976,523
Number of Sequences: 5004
Number of extensions: 15405
Number of successful extensions: 53
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 75747362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)