Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30259
(302 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 71 2e-13
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 71 2e-13
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 69 5e-13
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 0.70
07_03_1709 - 28873172-28873327,28873519-28873584,28874067-288741... 27 2.1
09_04_0689 - 19480409-19480599,19480780-19480889,19481032-194811... 27 2.8
02_05_1308 + 35601314-35601390,35602486-35602566,35603513-356040... 27 2.8
06_02_0286 - 13802917-13803336 27 3.7
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 26 4.9
10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754 26 4.9
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402 26 4.9
02_05_1194 - 34881450-34881593,34882023-34882220,34882522-348826... 26 4.9
04_04_0018 - 22178972-22179179,22179264-22179502 26 6.5
12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,340... 25 8.6
11_06_0217 - 21353558-21353660,21354680-21355510,21356340-213564... 25 8.6
10_08_1059 + 22618999-22619206,22620386-22620416,22620440-226209... 25 8.6
03_05_0483 - 24806984-24808324 25 8.6
03_04_0046 - 16781020-16781496 25 8.6
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 70.5 bits (165), Expect = 2e-13
Identities = 29/56 (51%), Positives = 46/56 (82%)
Frame = +3
Query: 9 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 177 SSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 70.5 bits (165), Expect = 2e-13
Identities = 29/56 (51%), Positives = 46/56 (82%)
Frame = +3
Query: 9 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++ KLME+H
Sbjct: 177 SSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVH 232
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 69.3 bits (162), Expect = 5e-13
Identities = 29/53 (54%), Positives = 44/53 (83%)
Frame = +3
Query: 18 ELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
+L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++ KLME+H
Sbjct: 180 DLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 27 EVVNKLIPDSIAKDIEKACHGIYPLRD 107
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>07_03_1709 -
28873172-28873327,28873519-28873584,28874067-28874127,
28875406-28875462,28876301-28876531,28876685-28876799,
28876897-28877136,28877222-28877316,28877406-28877585,
28877663-28877839,28877920-28878890
Length = 782
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 141 ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 25
A++ SPF + GRC PS P S S+ +PPP
Sbjct: 79 AAAAHSPFMLSRQNSGRCGTAPS--PLSVSSPSSWAPPP 115
>09_04_0689 -
19480409-19480599,19480780-19480889,19481032-19481117,
19481410-19481523,19481697-19482066,19482216-19482346,
19482628-19482736,19482901-19483022,19483113-19483219,
19483447-19483551,19483654-19483812,19484071-19484126,
19484200-19484251,19486724-19486821,19487086-19487210
Length = 644
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = -1
Query: 266 LIKHLLNGRLVALLP----FRLVSGFPLASTAFAVKFHQLRDLETGPL 135
+++++ N +++ LP R +SG P A V +H L E GPL
Sbjct: 356 MLQYIANPVMLSTLPDGKIVRGLSGLPKQGPAVIVGYHMLLGFELGPL 403
>02_05_1308 +
35601314-35601390,35602486-35602566,35603513-35604064,
35604998-35605408,35606830-35607544
Length = 611
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 68 HREGLPWHLPSARCLHPKGESVEEAPFRDLEV 163
H +G W L R L P G +V+ RD E+
Sbjct: 212 HHDGEAWRLKIQRLLPPHGITVKHISDRDTEI 243
>06_02_0286 - 13802917-13803336
Length = 139
Score = 26.6 bits (56), Expect = 3.7
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 221 FRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDANIAQRVDAMAGLL 72
F + GFP S VK H + ++T L HF D + + A+ GLL
Sbjct: 45 FAAILGFPARSRTNRVKIHDEKPMDTNYL-HFLYQD--VDYELGAIKGLL 91
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 26.2 bits (55), Expect = 4.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 53 LHCQGHREGLPWHLPSARCL 112
+HCQ H+ G WH + C+
Sbjct: 87 VHCQYHKSGCQWHGNLSDCI 106
>10_01_0250 - 2622738-2623328,2626525-2627169,2627701-2627754
Length = 429
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 236 VALLPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDAN 108
V F + GFP S VK H + ++T L HF D +
Sbjct: 275 VTYAKFAAILGFPARSRTNRVKIHDEKPMDTNSL-HFLYQDVD 316
>03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402
Length = 346
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 236 VALLPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDAN 108
V F + GFP S VK H + ++T L HF D +
Sbjct: 209 VTYAKFAAILGFPARSRTNRVKIHDEKPMDTNSL-HFLYQDVD 250
>02_05_1194 -
34881450-34881593,34882023-34882220,34882522-34882638,
34882753-34882908,34883192-34883341,34883418-34883527,
34883589-34883730,34883836-34884054,34887004-34887099,
34887187-34887489,34887575-34887624,34888003-34888114,
34888204-34888279,34888389-34888684,34888763-34888872,
34889071-34889120,34890439-34890488,34890636-34890816,
34890901-34890932
Length = 863
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 257 HLLNGRLVALLPFRLVSGFPLASTAFAVKFHQLR 156
HL++ + PF + GF L S + V F Q+R
Sbjct: 46 HLISAASLVAAPFVFLPGFSLVSISKGVIFSQIR 79
>04_04_0018 - 22178972-22179179,22179264-22179502
Length = 148
Score = 25.8 bits (54), Expect = 6.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -3
Query: 150 RNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTC 37
RN S LS G + + C S+ PW +S + TC
Sbjct: 63 RNPPESRLSELGVREWPKWGCE--KSKFPWTYSAKETC 98
>12_01_0433 - 3402250-3402536,3402644-3403030,3403523-3403957,
3404071-3404562,3404718-3404821,3404913-3404994,
3405085-3405441,3405532-3406089,3406376-3406479,
3406575-3406650,3406764-3406898,3407192-3407494,
3407581-3408345,3409459-3412591,3412763-3412882
Length = 2445
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 149 ETGPLQHFHLSDANIAQRVDAMAGLLD 69
E G QH+ + D NIA VD+ L D
Sbjct: 1160 EEGNQQHYMIDDGNIAAEVDSGNKLSD 1186
>11_06_0217 -
21353558-21353660,21354680-21355510,21356340-21356464,
21356546-21357076,21357207-21357650,21358469-21358612
Length = 725
Score = 25.4 bits (53), Expect = 8.6
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = -3
Query: 117 GCKHRAEGRCHGRP 76
GC + E CHGRP
Sbjct: 17 GCGYSCEASCHGRP 30
>10_08_1059 +
22618999-22619206,22620386-22620416,22620440-22620974,
22621065-22621319
Length = 342
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Frame = +2
Query: 59 CQGHREGLPWHLPSARCLH-PKGESV 133
C G R P HLPSA H P S+
Sbjct: 34 CSGCRPASPLHLPSAESAHRPVSSSI 59
>03_05_0483 - 24806984-24808324
Length = 446
Score = 25.4 bits (53), Expect = 8.6
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = -1
Query: 224 PFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDANI--AQRVDAMAGLLDVLGNGV 51
PFR + L ++AFA+ H + T L H ++A + + R DA LL +L
Sbjct: 81 PFRPLRFLRLYTSAFALSPHPVAVSPTPRLAGIHSAEAQVLDSTRADAADRLLRLLMLAP 140
Query: 50 RNQLVHHL 27
L HL
Sbjct: 141 ARALPLHL 148
>03_04_0046 - 16781020-16781496
Length = 158
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 152 LETGPLQHFHLSDANIAQRVDAMAGLLDVLGNGV--RNQLVHHLPEFRVSD 6
L+ ++ F D A+ VDA LD G+GV R +L L FR+ D
Sbjct: 6 LDGSTVRGFVADDDAFARSVDARFEALDANGDGVLSRAELRRALESFRLLD 56
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,221,134
Number of Sequences: 37544
Number of extensions: 124282
Number of successful extensions: 461
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 351703996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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