Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30259
(302 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21) 98 1e-21
SB_20921| Best HMM Match : WD40 (HMM E-Value=8.9) 27 3.9
SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.9
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_18995| Best HMM Match : rve (HMM E-Value=0.0012) 26 5.1
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 26 5.1
SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.1
SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09) 26 6.7
SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0) 25 8.9
SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 25 8.9
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 25 8.9
SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05) 25 8.9
>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
Length = 147
Score = 97.9 bits (233), Expect = 1e-21
Identities = 48/88 (54%), Positives = 64/88 (72%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH-X 179
+V+ ++L+EVVNKLIPDSI KDIEK+C IYPL DV IRKVKVLK+P+F+I KLME+H
Sbjct: 58 EVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFDIGKLMEMHGE 117
Query: 180 XXXXXXXXXXDKSER---QEGYEPPVQE 254
D++ +EG+EPP+Q+
Sbjct: 118 ASSHATTTTTDETGTKIDREGFEPPIQD 145
>SB_20921| Best HMM Match : WD40 (HMM E-Value=8.9)
Length = 101
Score = 26.6 bits (56), Expect = 3.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 251 LNGRLVALL-PFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHL-SDANI 105
+NGR VA P L+ F +K + LR + GP FH+ +D NI
Sbjct: 5 VNGRPVAAFDPEGLI--FAAGIDCEMIKLYDLRSFDKGPFSTFHIQTDPNI 53
>SB_5591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 26.6 bits (56), Expect = 3.9
Identities = 13/33 (39%), Positives = 15/33 (45%)
Frame = -3
Query: 129 LSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP 31
L P GC R G S P + +Q STC P
Sbjct: 457 LQPGGCDSRISGGRRKGSSSAPPRGAQRSTCRP 489
>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 59 CQGHREGLP-WHLPSARCLHPKGESVEEAPFR 151
C G E L HLP +C+ K E+ PFR
Sbjct: 339 CCGSEESLMLMHLPLQKCIGKKDLGSEQRPFR 370
>SB_18995| Best HMM Match : rve (HMM E-Value=0.0012)
Length = 1225
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 171 VPSTSRSRNGASSTLSPFGC 112
VP+TSRS + AS +L+ GC
Sbjct: 814 VPATSRSGDSASRSLTNLGC 833
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -3
Query: 81 RPSRCPWQWSQESTCSPPP 25
RP R P++W + +PPP
Sbjct: 583 RPQRRPYRWKRAKPTTPPP 601
>SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 925
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 227 LPFRLVSGFPLASTAFAVKFHQLRDLETGPLQHFHL 120
L + V G P + F V F ++ E P++H HL
Sbjct: 871 LNIKKVLGAPQSPETFRVTFWLQQNFENSPIEHNHL 906
>SB_8350| Best HMM Match : ShTK (HMM E-Value=2.5e-09)
Length = 1103
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 18 ELREVVNKLIPDSIAKDIEKA 80
E + V+NKL+ +SIAK + +A
Sbjct: 340 EAQSVINKLVDESIAKKVTEA 360
>SB_15453| Best HMM Match : Prenyltrans (HMM E-Value=0)
Length = 2376
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +3
Query: 24 REVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKV 131
RE ++K +PD + KDI G PL + K+
Sbjct: 1014 REWIDKNLPDLVVKDITSLLEGGSPLELIAANGGKI 1049
>SB_13477| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 628
Score = 25.4 bits (53), Expect = 8.9
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 9/56 (16%)
Frame = -3
Query: 165 STSRSRNGASSTLSPFGCKHR----AEGRCHGRPSRCPWQ-----WSQESTCSPPP 25
S S N ++ P C + A RC RC Q WS E+ CS PP
Sbjct: 132 SDEMSCNATATPFVPRSCHYWEFQCANRRCVYNSQRCDGQNDCGDWSDETGCSTPP 187
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 187 VEARGKPETSLNGRRATSL 243
+ GKPE LNG R TSL
Sbjct: 1808 IRVAGKPEPWLNGSRMTSL 1826
>SB_1597| Best HMM Match : PHD (HMM E-Value=1.4e-05)
Length = 763
Score = 25.4 bits (53), Expect = 8.9
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 68 HREGL-PWHLPSARCLHPKGESVEEAP 145
HR L P+ LPS+ HP+ +E AP
Sbjct: 44 HRRLLSPYKLPSSNVRHPRAVPLEAAP 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,714,385
Number of Sequences: 59808
Number of extensions: 128160
Number of successful extensions: 404
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 364677581
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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