Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30259
(302 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal pr... 100 4e-22
AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD, i... 100 4e-22
AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB, i... 100 4e-22
AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA, i... 100 4e-22
Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal prot... 88 2e-18
AY051866-1|AAK93290.1| 332|Drosophila melanogaster LD36157p pro... 27 3.4
AE014298-2587|AAF48743.1| 332|Drosophila melanogaster CG8326-PA... 27 3.4
BT023139-1|AAY55555.1| 359|Drosophila melanogaster IP10845p pro... 26 8.0
>AF034971-1|AAC62117.1| 268|Drosophila melanogaster ribosomal
protein S3a protein.
Length = 268
Score = 100 bits (239), Expect = 4e-22
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXX 182
+V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 178 EVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237
Query: 183 XXXXXXXXXDKSE-----RQEGYEPPVQE 254
SE R EGYEPPVQE
Sbjct: 238 GGGKSVEAVVSSEGAVIDRPEGYEPPVQE 266
>AE014135-6|AAN06542.1| 163|Drosophila melanogaster CG2168-PD,
isoform D protein.
Length = 163
Score = 100 bits (239), Expect = 4e-22
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXX 182
+V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 73 EVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 132
Query: 183 XXXXXXXXXDKSE-----RQEGYEPPVQE 254
SE R EGYEPPVQE
Sbjct: 133 GGGKSVEAVVSSEGAVIDRPEGYEPPVQE 161
>AE014135-5|AAN06541.1| 218|Drosophila melanogaster CG2168-PB,
isoform B protein.
Length = 218
Score = 100 bits (239), Expect = 4e-22
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXX 182
+V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 128 EVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 187
Query: 183 XXXXXXXXXDKSE-----RQEGYEPPVQE 254
SE R EGYEPPVQE
Sbjct: 188 GGGKSVEAVVSSEGAVIDRPEGYEPPVQE 216
>AE014135-4|AAF59372.1| 268|Drosophila melanogaster CG2168-PA,
isoform A protein.
Length = 268
Score = 100 bits (239), Expect = 4e-22
Identities = 51/89 (57%), Positives = 63/89 (70%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXX 182
+V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 178 EVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELHGD 237
Query: 183 XXXXXXXXXDKSE-----RQEGYEPPVQE 254
SE R EGYEPPVQE
Sbjct: 238 GGGKSVEAVVSSEGAVIDRPEGYEPPVQE 266
>Y10115-1|CAA71201.1| 270|Drosophila melanogaster ribosomal protein
S3a protein.
Length = 270
Score = 87.8 bits (208), Expect = 2e-18
Identities = 39/58 (67%), Positives = 51/58 (87%)
Frame = +3
Query: 3 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
+V+ ++L+++VNKL DSIAKDIEK+C IYPL DV IRKVKVLK+PRF++SKL+ELH
Sbjct: 180 EVSGADLKQLVNKLALDSIAKDIEKSCQRIYPLHDVYIRKVKVLKKPRFDVSKLLELH 237
>AY051866-1|AAK93290.1| 332|Drosophila melanogaster LD36157p
protein.
Length = 332
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 9 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 170
T+ + VN++ S+ + +A +G+ +R+ ++ V KRP+ EI +L++
Sbjct: 103 TDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNEIDELLK 156
>AE014298-2587|AAF48743.1| 332|Drosophila melanogaster CG8326-PA
protein.
Length = 332
Score = 27.5 bits (58), Expect = 3.4
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 9 TNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLME 170
T+ + VN++ S+ + +A +G+ +R+ ++ V KRP+ EI +L++
Sbjct: 103 TDEDYLRRVNRMTNASVREAHYEAKYGVNVIRNPKTGEITVQKRPKNEIDELLK 156
>BT023139-1|AAY55555.1| 359|Drosophila melanogaster IP10845p
protein.
Length = 359
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 99 EGRCHGRPSRCPWQWSQESTCSPP 28
EG P+ P+ WS+ ST SPP
Sbjct: 282 EGEGAFAPAAPPYPWSEGSTLSPP 305
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,512,781
Number of Sequences: 53049
Number of extensions: 195286
Number of successful extensions: 542
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 24,988,368
effective HSP length: 73
effective length of database: 21,115,791
effective search space used: 570126357
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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