Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30259
         (302 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...    92   8e-20
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   0.85 
AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical ...    27   3.4  
Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical pr...    26   4.5  
Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical pr...    26   4.5  
AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger p...    26   4.5  
U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical ...    26   6.0  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score = 91.9 bits (218), Expect = 8e-20
 Identities = 42/84 (50%), Positives = 60/84 (71%)
 Frame = +3

Query: 3   DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELHXX 182
           +VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++ +L +LH  
Sbjct: 173 EVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDLGRLHDLH-G 231

Query: 183 XXXXXXXXXDKSERQEGYEPPVQE 254
                    +K +R + YEPPVQ+
Sbjct: 232 DSITVGADGEKVDRPDDYEPPVQQ 255


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 165 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 25
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>AC006649-2|AAF39864.2|  259|Caenorhabditis elegans Hypothetical
           protein H01M10.1 protein.
          Length = 259

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 98  SARCLHPKGESVEEAPFRDLEVDGT 172
           SA C  P+  SV E PF  +  DGT
Sbjct: 78  SASCSQPRAPSVYEDPFVAVAADGT 102


>Z92831-2|CAB07368.2|  861|Caenorhabditis elegans Hypothetical
           protein F22G12.4 protein.
          Length = 861

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 263 IKHLLNGRLVALLPFRLVSGFPLASTAFAVKFHQLRDL 150
           +K LL+   V  +P R   G  + S A A+K HQ+  L
Sbjct: 491 VKILLDAENVEFIPIRDKFGQTILSQAMAMKDHQIASL 528


>Z82283-1|CAB05282.1|  354|Caenorhabditis elegans Hypothetical
           protein T23G4.1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 171 VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 25
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTP 85


>AY046083-1|AAL02420.1|  354|Caenorhabditis elegans zinc finger
           protein TLP-1 protein.
          Length = 354

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 171 VPSTSRSRNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 25
           +P  S  +NGASS+ SP G K       H +  +   Q  Q+S+    P
Sbjct: 37  LPEGSSKKNGASSSSSPQGKKDEKNHILHHQHHQQQQQSKQKSSPRSTP 85


>U13071-1|AAL65794.1|  462|Caenorhabditis elegans Hypothetical
           protein T22F7.5 protein.
          Length = 462

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 75  KACHGIYPLRDVCIRKVKVLKRPR 146
           K  HG  P +D C+  + + + PR
Sbjct: 279 KCAHGSSPYKDRCLNNINICEAPR 302


>AC006603-4|AAF39747.2|  379|Caenorhabditis elegans Hypothetical
           protein B0524.2 protein.
          Length = 379

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 6   VTNSELREVVNKLIPDSIAK 65
           V +  LR+VV K +PD +AK
Sbjct: 208 VISDRLRKVVEKFLPDDVAK 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,567,537
Number of Sequences: 27780
Number of extensions: 93044
Number of successful extensions: 337
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 323867940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)