Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30259
         (302 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)            75   9e-15
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...    73   5e-14
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    27   1.8  
At5g38550.1 68418.m04661 jacalin lectin family protein similar t...    27   2.4  
At5g44290.1 68418.m05421 protein kinase family protein contains ...    27   3.2  
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg...    27   3.2  
At1g54570.1 68414.m06223 esterase/lipase/thioesterase family pro...    27   3.2  
At5g28080.1 68418.m03391 protein kinase family protein contains ...    26   4.2  
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ...    25   7.4  
At4g10300.1 68417.m01694 expressed protein                             25   7.4  
At1g01780.1 68414.m00097 LIM domain-containing protein similar t...    25   7.4  
At5g66100.1 68418.m08327 La domain-containing protein similar to...    25   9.7  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score = 74.9 bits (176), Expect = 9e-15
 Identities = 31/58 (53%), Positives = 48/58 (82%)
 Frame = +3

Query: 3   DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
           + ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLME+H
Sbjct: 175 EASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVH 232


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score = 72.5 bits (170), Expect = 5e-14
 Identities = 29/58 (50%), Positives = 48/58 (82%)
 Frame = +3

Query: 3   DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEISKLMELH 176
           + ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F++ KLM++H
Sbjct: 175 EASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVH 232


>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/62 (30%), Positives = 24/62 (38%)
 Frame = -3

Query: 258 TPLEREARSPPAVQTXXXXXXXXXXXXREVPSTSRSRNGASSTLSPFGCKHRAEGRCHGR 79
           TP+ R +R   +                  PS SRS      + SP G KH+ E R  GR
Sbjct: 587 TPVNRRSRRSSSASRSPDRRRRRSPSSSRSPSRSRSPPVLHRSPSPRGRKHQRERRSPGR 646

Query: 78  PS 73
            S
Sbjct: 647 LS 648


>At5g38550.1 68418.m04661 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 594

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +2

Query: 53  LHCQGHREGLPW 88
           L CQG R+GLPW
Sbjct: 299 LECQGDRKGLPW 310


>At5g44290.1 68418.m05421 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 644

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 90  IYPLRDVCIRKVKVLKRPRFEISKL 164
           +Y  RD+   K+  LKR RF++S L
Sbjct: 151 VYKARDLTNNKIVALKRVRFDLSDL 175


>At1g78700.1 68414.m09173 brassinosteroid signalling positive
           regulator-related contains similarity to BZR1 protein
           [Arabidopsis thaliana] gi|20270971|gb|AAM18490
          Length = 325

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/36 (38%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
 Frame = -3

Query: 126 SPFGCKHRAEGRCHGRPSRCPWQWSQESTCSP--PP 25
           +PFG K  A     G      W   Q  TCSP  PP
Sbjct: 234 NPFGFKEEAASAAGGGGGSRMWTPGQSGTCSPAIPP 269


>At1g54570.1 68414.m06223 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 704

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -1

Query: 212 VSGFPLASTAFAVKFHQLRDLETGPLQHFHLSDANIAQR 96
           ++G P       V +H L  LE GP+    + + NI  R
Sbjct: 438 LAGVPDKGPVLLVGYHMLMGLELGPMSEAFIKEKNILFR 476


>At5g28080.1 68418.m03391 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 406

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 131 HFHLSDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEF 18
           HF   D +  +RV++  GL+D  G  +R+   +H+P +
Sbjct: 194 HFLCIDESDMRRVESEKGLIDEAGTPLRHS--YHIPHY 229


>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 675

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = -3

Query: 114 CKHRAEGRCH-GRPSRCPWQWSQESTCSP 31
           C+H  +GRCH G   +       E+ CSP
Sbjct: 356 CRHYLKGRCHEGDKCKFSHDTIPETKCSP 384


>At4g10300.1 68417.m01694 expressed protein
          Length = 134

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 150 RNGASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTC 37
           +N   S L+  G +   +  C   PS+ PW +S + TC
Sbjct: 50  KNPPESKLTQLGVRSWPKWGCP--PSKFPWTYSAKETC 85


>At1g01780.1 68414.m00097 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 205

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 74  EGLPWHLPSARCLHPKG 124
           EG+P+H    RC H KG
Sbjct: 26  EGMPYHKSCFRCTHCKG 42


>At5g66100.1 68418.m08327 La domain-containing protein similar to
           SP|P40796 La protein homolog (La ribonucleoprotein) (La
           autoantigen homolog) {Drosophila melanogaster}; contains
           Pfam profile PF05383: La domain
          Length = 453

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +2

Query: 41  VDS*LHCQGHREGLPWHLPSARCLHPKGESVEEAPF 148
           +DS +    H +  PW LPS    HP     ++ PF
Sbjct: 18  IDSSISRSRHGDSSPWLLPSDSHDHPTLSLSQDDPF 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,400,683
Number of Sequences: 28952
Number of extensions: 87753
Number of successful extensions: 296
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 301317600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)