Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30257
(717 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 104 1e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 103 2e-23
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.88
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 28 1.5
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 28 1.5
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 27 2.0
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.5
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.5
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 26 4.7
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb... 25 8.2
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 8.2
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 104 bits (249), Expect = 1e-23
Identities = 47/88 (53%), Positives = 67/88 (76%)
Frame = +2
Query: 254 AFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 433
AFRK +L E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF
Sbjct: 80 AFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFV 139
Query: 434 IGFTNKDSLSQRKTCYAQHTQVRAIERK 517
IGFT + + +KT YAQ +Q+RAI +K
Sbjct: 140 IGFTRRRANQVKKTTYAQSSQIRAIRQK 167
Score = 86.2 bits (204), Expect = 4e-18
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +3
Query: 69 IVDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 245
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D +
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEE 78
Score = 78.2 bits (184), Expect = 1e-15
Identities = 33/70 (47%), Positives = 52/70 (74%)
Frame = +1
Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
R+KM ++I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P+ +
Sbjct: 165 RQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHD 224
Query: 688 ISKLMELHGE 717
KL+ELHGE
Sbjct: 225 AQKLLELHGE 234
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 103 bits (248), Expect = 2e-23
Identities = 46/88 (52%), Positives = 67/88 (76%)
Frame = +2
Query: 254 AFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 433
+FRK +L E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F
Sbjct: 80 SFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFV 139
Query: 434 IGFTNKDSLSQRKTCYAQHTQVRAIERK 517
IGFT++ +KT YAQ +Q+RAI +K
Sbjct: 140 IGFTSRRVNQVKKTTYAQSSQIRAIHQK 167
Score = 87.8 bits (208), Expect = 1e-18
Identities = 38/59 (64%), Positives = 47/59 (79%)
Frame = +3
Query: 69 IVDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 245
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G K A++ LKGR+ EVSLADLQ D +
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQKDEE 78
Score = 76.2 bits (179), Expect = 4e-15
Identities = 33/69 (47%), Positives = 49/69 (71%)
Frame = +1
Query: 511 KKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEI 690
+KM ++I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P+ +
Sbjct: 166 QKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDA 225
Query: 691 SKLMELHGE 717
KL+ELHGE
Sbjct: 226 QKLLELHGE 234
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 28.7 bits (61), Expect = 0.88
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 430 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNRKKMCEIITRDVTNSELREVVNKL 579
LHW+ L+ +Q + P H+GQ S ++ E + V E +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/24 (58%), Positives = 15/24 (62%)
Frame = -3
Query: 703 PSTSRSRNGASSTLSPFGCKHRAE 632
PSTSR RN S LS KHRA+
Sbjct: 736 PSTSRERNNNISELSNSRTKHRAK 759
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +1
Query: 523 EIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 654
E + D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 387 EFVPPDALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/66 (25%), Positives = 28/66 (42%)
Frame = +2
Query: 347 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIERKCVK 526
++ W L+ T GYV+R GFT+ ++ + K +A + ER +
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFAD-KDTKLYERALQQ 853
Query: 527 SLHATS 544
SL S
Sbjct: 854 SLDTIS 859
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.5
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 275 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 406
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.5
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 370 LPFFNHPPELIGCEVHAVEVAEHITS 293
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -1
Query: 291 CTYSAINLNLRKAFPRQCQL-VDQPGKLRKLFPSILPKQFSFPGYG*Q 151
C +++ + L+K FP +C++ + LR L ++P +F+ G+G Q
Sbjct: 101 CCSASLLMQLKKKFPDRCEIKLYHTPNLRGLRKQLVPHRFN-EGWGLQ 147
>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 636 ARCLHPKGESVEEAPFRDLEVD 701
+RCL ++V+EA RDLE++
Sbjct: 22 SRCLGFAAQNVDEANLRDLEIE 43
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 326 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 424
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,004,633
Number of Sequences: 5004
Number of extensions: 63871
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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