Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30257
(717 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 130 1e-30
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 128 3e-30
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 128 6e-30
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 3.7
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 29 4.9
06_03_0290 - 19193707-19193752,19193822-19194090 28 6.4
12_02_0090 + 13493311-13494180 28 8.5
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 8.5
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 130 bits (314), Expect = 1e-30
Identities = 60/92 (65%), Positives = 74/92 (80%)
Frame = +2
Query: 251 KAFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 430
+A+RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 431 CIGFTNKDSLSQRKTCYAQHTQVRAIERKCVK 526
CIGFT + ++TCYAQ +Q+R I RK V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (240), Expect = 1e-21
Identities = 46/58 (79%), Positives = 51/58 (87%)
Frame = +3
Query: 72 VDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 245
VDPF +KDWYD+KAPSVF+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
Score = 84.2 bits (199), Expect = 9e-17
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = +1
Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
R+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 688 ISKLMELHGE 717
+ KLME+HG+
Sbjct: 225 LGKLMEVHGD 234
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 128 bits (310), Expect = 3e-30
Identities = 60/92 (65%), Positives = 73/92 (79%)
Frame = +2
Query: 251 KAFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 430
+A+RK RL AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 431 CIGFTNKDSLSQRKTCYAQHTQVRAIERKCVK 526
CIGFT + ++TCYAQ +Q+R I RK V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 101 bits (241), Expect = 8e-22
Identities = 46/58 (79%), Positives = 52/58 (89%)
Frame = +3
Query: 72 VDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 245
VDPF++KDWYD+KAP+VFS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
Score = 83.0 bits (196), Expect = 2e-16
Identities = 35/70 (50%), Positives = 54/70 (77%)
Frame = +1
Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
R+KM EI+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F+
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFD 224
Query: 688 ISKLMELHGE 717
+ KLME+HG+
Sbjct: 225 LGKLMEVHGD 234
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 128 bits (308), Expect = 6e-30
Identities = 59/92 (64%), Positives = 73/92 (79%)
Frame = +2
Query: 251 KAFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 430
+A+RK RL AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 431 CIGFTNKDSLSQRKTCYAQHTQVRAIERKCVK 526
CIGFT + ++TCYAQ +Q+R I RK V+
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 101 bits (241), Expect = 8e-22
Identities = 47/58 (81%), Positives = 51/58 (87%)
Frame = +3
Query: 72 VDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 245
VDPF +KDWYD+KAPSVF+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78
Score = 84.2 bits (199), Expect = 9e-17
Identities = 35/70 (50%), Positives = 55/70 (78%)
Frame = +1
Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
R+KM EI+ ++ +L+E+V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F+
Sbjct: 165 RRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 688 ISKLMELHGE 717
+ KLME+HG+
Sbjct: 225 LGKLMEVHGD 234
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 562 EVVNKLIPDSIAKDIEKACHGIYPLRD 642
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/85 (21%), Positives = 33/85 (38%)
Frame = -3
Query: 409 IGCLHINVGFDESLPFFNHPPELIGCEVHAVEVAEHITSLHIFGD*SEFAESLSASVSAC 230
+ CL + G + +P C ++ + LH FA S S+S
Sbjct: 586 MSCLEVETGIQNTNTLSGYPVANRRCSWESIRLFNR--ELH--SSEKSFAPIASDSISLV 641
Query: 229 RSARETSKTLPFNPSEAIFVPWVRL 155
S +T +PF +F P++++
Sbjct: 642 ISVEDTGVGIPFEAQSRVFTPFMQV 666
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 306 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 395
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>12_02_0090 + 13493311-13494180
Length = 289
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +2
Query: 500 RAIERKCVKSLHATSLTLNSGRW*TS*FLTPLPRTSRRPA 619
RA ERK ++LH + TL + TP+P T+RRP+
Sbjct: 44 RAAERKKRRALHQAARTLAPAHKQAA---TPIPATTRRPS 80
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 215 NFENSSLQSFRSNFRSLGTVDKRGADLPLAE 123
+FENS LQSF +L + K+G P E
Sbjct: 216 SFENSELQSFTDKIENLSSSQKKGYFKPKRE 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,463,140
Number of Sequences: 37544
Number of extensions: 449897
Number of successful extensions: 1261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1261
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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