Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30257
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)         113   2e-25
SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)         32   0.53 
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_812| Best HMM Match : FH2 (HMM E-Value=0)                           28   8.7  

>SB_37698| Best HMM Match : Ribosomal_S3Ae (HMM E-Value=5e-21)
          Length = 147

 Score =  113 bits (271), Expect = 2e-25
 Identities = 51/70 (72%), Positives = 62/70 (88%)
 Frame = +1

Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
           RKKM +IITR+V+ ++L+EVVNKLIPDSI KDIEK+C  IYPL DV IRKVKVLK+P+F+
Sbjct: 48  RKKMVDIITREVSTNDLKEVVNKLIPDSIGKDIEKSCQSIYPLHDVHIRKVKVLKKPKFD 107

Query: 688 ISKLMELHGE 717
           I KLME+HGE
Sbjct: 108 IGKLMEMHGE 117



 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 32/51 (62%), Positives = 41/51 (80%)
 Frame = +2

Query: 371 TLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIERKCV 523
           TLIEA +DVKTTDGY+LR+FCIGFT +     +KT YA+HTQ++AI +K V
Sbjct: 2   TLIEAAVDVKTTDGYLLRMFCIGFTKRRQNQIKKTAYAKHTQIKAIRKKMV 52


>SB_3674| Best HMM Match : Retrotrans_gag (HMM E-Value=1.7e-06)
          Length = 882

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 20/74 (27%), Positives = 36/74 (48%)
 Frame = +1

Query: 460 EPTQDVLRPAHSGQSNRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLR 639
           EPT D  RP+H   ++     +I  R +   ELR+ + +  P +   D  +  +   P+ 
Sbjct: 276 EPTPDPSRPSHRPGADNLTRDDI--RQIIQQELRKELRRSNPPNQNYDRNRRTYTGIPIS 333

Query: 640 DVCIRKVKVLKRPR 681
              IR+ ++ +RPR
Sbjct: 334 SKYIREGRIEERPR 347


>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)
 Frame = -1

Query: 561 PEFRVSDVACNDFTH--FLSIALT*VCWA*HVLRWLKESLLVKPMQKTRRTYPSVVFTSM 388
           P  R  D  C  FTH   + I++    +   ++   +   LVKPMQ  RR     V+ ++
Sbjct: 85  PTGRSGDWICKFFTHNAIMQISVLTSIFTLTIVSVERYHALVKPMQVGRRLTEDTVWYAV 144

Query: 387 LASMRVCHFLTIHLSLSVVRSMPWKLQSTLRPCT 286
           +AS       T  L L+V   +  K   T + CT
Sbjct: 145 IASW------TASLILTVPSFVAIKFDETRKACT 172


>SB_40531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 158 VDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLNTFFTALRQAFIFPDR 12
           VD +       + +++ D+ PIF  + V  LLL T FT L+   +  DR
Sbjct: 159 VDNQFVPFQTLQTKKAFDVEPIFNGKDVFLLLLWTLFTYLQVISVLNDR 207


>SB_812| Best HMM Match : FH2 (HMM E-Value=0)
          Length = 1430

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 484 PAHSGQSNRKKMCEIITRDVTNSELREVVNKLIPDSI 594
           P +    N+KKM  +  ++V NS L   VNK I  SI
Sbjct: 683 PGNLSTLNKKKMVRLFWQEVKNSPLINGVNKTIWGSI 719


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,371,103
Number of Sequences: 59808
Number of extensions: 515107
Number of successful extensions: 1496
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1495
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)