Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30257
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   108   4e-24
L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical pr...    29   4.4  
U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical p...    28   7.7  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  108 bits (259), Expect = 4e-24
 Identities = 52/89 (58%), Positives = 63/89 (70%)
 Frame = +2

Query: 257 FRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 436
           FRKF+LIAE VQG+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I
Sbjct: 79  FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138

Query: 437 GFTNKDSLSQRKTCYAQHTQVRAIERKCV 523
            FT K     +KT Y + +++R I  + +
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEMI 167



 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 43/53 (81%), Positives = 50/53 (94%)
 Frame = +3

Query: 72  VDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADL 230
           VDPF+RK+WYD+KAP++F+ RQVG TL+NRTQGTKIASEGLKGRVFEVSL DL
Sbjct: 20  VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL 72



 Score = 88.6 bits (210), Expect = 4e-18
 Identities = 38/70 (54%), Positives = 55/70 (78%)
 Frame = +1

Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
           R +M   I ++VT  +L+EVV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ +
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVD 222

Query: 688 ISKLMELHGE 717
           + +L +LHG+
Sbjct: 223 LGRLHDLHGD 232


>L25599-3|ABN43087.1|  570|Caenorhabditis elegans Hypothetical
           protein F54H12.8 protein.
          Length = 570

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 700 STSRSRNG--ASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 560
           S+S S N   ASST S     +    R   +P+  PWQ  Q S  +PPP
Sbjct: 94  SSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142


>U80030-12|AAG24159.1|  391|Caenorhabditis elegans Hypothetical
           protein K12D9.1 protein.
          Length = 391

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 621 MAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSIA 502
           ++GL+   GNG++ +L      FRV DV C +  H   +A
Sbjct: 184 ISGLIPAFGNGIKEKLED--GGFRVLDVGCGEGFHSCLLA 221


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  EEDCRPIHSQRLVRCQGSVCVQQEASRHHACQ 157
           E+DC PI+S+   +C  S C +     HH C+
Sbjct: 545 EQDC-PINSKSCEKCSHSKCEKCAKHPHHHCK 575


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,908,069
Number of Sequences: 27780
Number of extensions: 371958
Number of successful extensions: 1154
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)