Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30257
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   129   2e-30
At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           128   5e-30
At3g61035.1 68416.m06829 cytochrome P450 family protein similar ...    29   2.3  
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    29   3.1  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   5.4  
At5g11070.1 68418.m01293 expressed protein                             28   7.1  
At4g11720.1 68417.m01870 hypothetical protein                          28   7.1  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   7.1  

>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  129 bits (312), Expect = 2e-30
 Identities = 59/88 (67%), Positives = 70/88 (79%)
 Frame = +2

Query: 254 AFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 433
           A+RK RL AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FC
Sbjct: 80  AYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFC 139

Query: 434 IGFTNKDSLSQRKTCYAQHTQVRAIERK 517
           I FT + +   ++TCYAQ +Q+R I RK
Sbjct: 140 IAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score =  102 bits (245), Expect = 2e-22
 Identities = 47/58 (81%), Positives = 52/58 (89%)
 Frame = +3

Query: 72  VDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 245
           VDPF++KDWYDVKAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED 78



 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 35/70 (50%), Positives = 58/70 (82%)
 Frame = +1

Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
           R+KM +I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F+
Sbjct: 165 RRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFD 224

Query: 688 ISKLMELHGE 717
           + KLM++HG+
Sbjct: 225 LGKLMDVHGD 234


>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  128 bits (308), Expect = 5e-30
 Identities = 59/88 (67%), Positives = 70/88 (79%)
 Frame = +2

Query: 254 AFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFC 433
           A+RK RL AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FC
Sbjct: 80  AYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFC 139

Query: 434 IGFTNKDSLSQRKTCYAQHTQVRAIERK 517
           I FT + +   ++TCYAQ +Q+R I RK
Sbjct: 140 IAFTKRRANQVKRTCYAQSSQIRQIRRK 167



 Score = 98.7 bits (235), Expect = 3e-21
 Identities = 46/58 (79%), Positives = 50/58 (86%)
 Frame = +3

Query: 72  VDPFTRKDWYDVKAPSVFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTD 245
           VDPF++KDWYDVKAP  F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED 78



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 37/70 (52%), Positives = 58/70 (82%)
 Frame = +1

Query: 508 RKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFE 687
           R+KM EI+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P+F+
Sbjct: 165 RRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFD 224

Query: 688 ISKLMELHGE 717
           + KLME+HG+
Sbjct: 225 LGKLMEVHGD 234


>At3g61035.1 68416.m06829 cytochrome P450 family protein similar to
           Cytochrome P450 76C2 (SP:O64637) [Arabidopsis thaliana]
          Length = 340

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -1

Query: 657 LSDANIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSIALT*VCW 484
           L DA IA+R   +   +D L   + + ++  + E   S+V  ND  HFL    T V W
Sbjct: 250 LIDARIAERSSQIGPRVDALRGDLLDSVIDLIQE-EGSEVDMNDIKHFLCTNSTIVEW 306


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 526 FHTFSFDCSDLSVLGVARLA--LAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 368
           +H+   D S+++   V   A  +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 433 YHSHLDDLSNINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -1

Query: 645 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDFTHFLSIA 502
           +IAQRV  +AG+  +    +    V  LP F    V C+D T    +A
Sbjct: 432 SIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDATAIFDVA 479


>At5g11070.1 68418.m01293 expressed protein
          Length = 152

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 71  CRPIHSQRLVRCQGSVCVQQE-ASRHHACQPYPGN 172
           CR + S+  V C+ + C        HH  Q YPG+
Sbjct: 69  CRRVKSRIKVTCRNNNCAYNNCVHHHHHSQSYPGD 103


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 490 HSGQSNRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 657
           H GQ +      ++ RD ++S     ++++  DS  K   +A HGI   RDV + +
Sbjct: 594 HHGQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQRRRAKHGIVLPRDVHVER 649


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -2

Query: 203  SSLQSFRSNFRSLGTVDKRGADLPLAEHRRSLDIVPIFASEWVDNLLLN 57
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,118,660
Number of Sequences: 28952
Number of extensions: 350397
Number of successful extensions: 1047
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)