Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30254
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    95   7e-21
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    30   0.37 
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.6  
SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...    27   3.5  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   8.0  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    25   8.0  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 95.5 bits (227), Expect = 7e-21
 Identities = 44/84 (52%), Positives = 57/84 (67%), Gaps = 1/84 (1%)
 Frame = +3

Query: 6   SPNKMSIT-AQSGRAWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASG 182
           S NK++     SG  W  +PDH HY    +AT+ +Y   PD  REGGSIPVT+T +++  
Sbjct: 369 SKNKLAFNNMHSGSWWISSPDHWHYDVGKKATERVYGITPDFVREGGSIPVTVTFEQSLK 428

Query: 183 KNVLLLPMGAGDDMAHSQNEKINV 254
           KNVLLLPMG GDD AHS NEK+++
Sbjct: 429 KNVLLLPMGRGDDGAHSINEKLDL 452


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 457 GSLFISIYPSPGYERFHKI--KSFGKITKTIKTIS 359
           G ++   YP P YE+  +I   ++GK+ K I T++
Sbjct: 265 GPIYTYTYPKPAYEKIDQIGEGTYGKVYKAINTVT 299


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 505 HDLTVLFPKRGYKIDCGS 452
           HDL  LF KR ++ DCG+
Sbjct: 74  HDLVDLFNKRHFRCDCGT 91


>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 418 ERFHKIKSFGKITKTIKTIS 359
           +R   IK+  KITKTIKT++
Sbjct: 39  QRLKSIKNIEKITKTIKTVA 58


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
 Frame = -3

Query: 619 KTNELRKKVNIFLQNSVPDYFLNC*QSYTLPPKIDLPPHDLTVLFPK--RGYKID---CG 455
           K ++LR+ + ++ QN+       C    +L        HD  + F     G KID   CG
Sbjct: 350 KGSDLRQPLYVWQQNAAVKALSFCPWQRSLLAT-GAGSHDKHIRFYNCFNGKKIDELYCG 408

Query: 454 SLFISIYPSPGYERFHKIKSFGKITKTIKTISYSFYV*H-PRRPCLL 317
           +   SI+ SP Y  F    +FG    +++T+ + F V   P+  CL+
Sbjct: 409 AQITSIHWSPKYREFS--VTFG---YSLETVQHRFAVYSWPQLECLV 450


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 608 IEKKGQYFFTEFSSGLFSKLLTILYFT-AKNRSTS-TRLNC 492
           +E+     +  F+SGLF+K + ++Y T   N +T   RL C
Sbjct: 158 LERLKMGMYPRFTSGLFNKAIQVMYNTLVSNWNTEYARLLC 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,162
Number of Sequences: 5004
Number of extensions: 55834
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)