Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30254
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0455 - 3614011-3614503,3615007-3615072,3615154-3615347,361...    29   4.8  
12_01_0906 + 8799284-8799441,8800865-8801690,8801933-8802055,880...    28   6.3  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    28   6.3  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    28   6.3  
07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552     28   8.4  
01_06_0054 - 26027072-26028463                                         28   8.4  

>05_01_0455 -
           3614011-3614503,3615007-3615072,3615154-3615347,
           3615562-3615657,3615790-3615829,3616729-3616856
          Length = 338

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
 Frame = +2

Query: 5   VPEQDEHHGTER---PRL--DREPGPSALPGRRTRH*ADISDRSGHVPRRRFDPRHDHSA 169
           +P  + + GT R   P    DR PG +ALP     H    SD     PR R D    H  
Sbjct: 224 LPSNERYDGTRRYASPSYGRDRSPGGNALPANGRSHNL-TSDGMNPSPRERDDQNGSHRR 282

Query: 170 G 172
           G
Sbjct: 283 G 283


>12_01_0906 +
           8799284-8799441,8800865-8801690,8801933-8802055,
           8802144-8802210,8802611-8802714,8802798-8802900,
           8803103-8803401,8804009-8804263,8805471-8805776,
           8805866-8806194,8806829-8806916,8807027-8807164,
           8807438-8807458
          Length = 938

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
 Frame = +2

Query: 2   RVPEQDEHHGTERPRLDREPGPSALPGRRTRH*A-DISDRSGHVPRRRF---DPRHDHSA 169
           RVP+ +E  G  R R  R        GRR R  + D  D  G   RRR     P  + S 
Sbjct: 90  RVPDAEEEGGDRRRRPSRVSDDDKEGGRRRRRRSTDSDDERGDRHRRRHRRRSPSSESSD 149

Query: 170 GG 175
           GG
Sbjct: 150 GG 151


>06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,
            3363820-3364098,3364189-3364386,3364475-3365110,
            3365209-3365463,3365579-3365685,3365770-3369566,
            3369677-3370166,3370918-3371308,3371481-3371573,
            3371687-3371810,3372544-3372791
          Length = 2380

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 596  LFSQFVGLGHITKDIEICNFNVEDMKYIPFIKYNLKL 706
            L  +F+G  ++  D    NFN   +K+ P +KYN+KL
Sbjct: 2278 LSDRFLGF-YMVPDNTPWNFNFMGVKHDPLMKYNMKL 2313


>05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,
            3645328-3645525,3645614-3646249,3646352-3646606,
            3646718-3646824,3646909-3650705,3650816-3651305,
            3652043-3652433,3652621-3652713,3652818-3652941,
            3653871-3654118
          Length = 2350

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 596  LFSQFVGLGHITKDIEICNFNVEDMKYIPFIKYNLKL 706
            L  +F+G  ++  D    NFN   +K+ P +KYN+KL
Sbjct: 2278 LSDRFLGF-YMVPDNTPWNFNFMGVKHDPLMKYNMKL 2313


>07_03_0218 + 15305474-15306082,15306127-15306327,15306442-15306552
          Length = 306

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/58 (29%), Positives = 32/58 (55%)
 Frame = -3

Query: 250 LIFSFCECAMSSPAPMGNSNTFLPLASCRVIVTGIEPPSRDMSGSV*YISLVARAAAW 77
           L+F+F +  + +P P+G +   + LA+  +  TGI  P+R +  +V Y +  A +  W
Sbjct: 215 LLFNFDKSKVLAPLPIGFAVFMVHLATIPITGTGIN-PARSLGVAVVYNNNKAWSDQW 271


>01_06_0054 - 26027072-26028463
          Length = 463

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 250 LIFSFCECAMSSPAPMGNSNTFLPLASCRVIVTGIEPPSRDMSGSV*YISLVARAAAW 77
           L+FS  E AM+S        +F+ L    V +TG       +SG V Y+ L  R   W
Sbjct: 378 LLFSGIELAMASRDMGSKQESFVMLVCAGVSLTGSSAALGFISGIVLYLLLRLRDLEW 435


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,119,787
Number of Sequences: 37544
Number of extensions: 389433
Number of successful extensions: 895
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 894
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)