Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30254
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096)               115   3e-26
SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_23338| Best HMM Match : Homeobox (HMM E-Value=3.1e-26)              28   6.5  
SB_49271| Best HMM Match : DUF916 (HMM E-Value=4.4)                    28   6.5  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   8.5  

>SB_5477| Best HMM Match : M20_dimer (HMM E-Value=0.096)
          Length = 543

 Score =  115 bits (277), Expect = 3e-26
 Identities = 51/84 (60%), Positives = 65/84 (77%), Gaps = 1/84 (1%)
 Frame = +3

Query: 3   GSPNKMSITA-QSGRAWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEAS 179
           GSPN + ++    G+ W  + DHPHYQA   A K ++  DPD++REGGSIPVT++LQEA+
Sbjct: 98  GSPNPVKVSCGHGGKPWMSDFDHPHYQAGRNAMKTVFGVDPDLTREGGSIPVTLSLQEAT 157

Query: 180 GKNVLLLPMGAGDDMAHSQNEKIN 251
           GKNV+LLP+GA DD AHSQNEKIN
Sbjct: 158 GKNVMLLPVGACDDGAHSQNEKIN 181


>SB_52975| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1077

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = -3

Query: 208  PMGNSNTFLPLASCRVIVTGIEPPSRDMSGSV*YISLVARAAAW*CGWSGFSVQARPLC 32
            P  +  T   L SC  +   + PP R + G++  ISL    AA  C  S   V  RP+C
Sbjct: 935  PASDGKTRRKLGSCGALAQPVGPPPRGLLGALWCISLQQAVAA--CSGSAEVVFLRPVC 991


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 214 PAPMGNSNTFLPLASCRVIVTGIEPPSRDM 125
           P   G+SNT+ P   C      + PP  D+
Sbjct: 604 PTGCGSSNTWTPCTDCETTYGSVRPPGNDL 633


>SB_23338| Best HMM Match : Homeobox (HMM E-Value=3.1e-26)
          Length = 275

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
 Frame = +3

Query: 12  NKMSITAQSG-RAWTENPDHPHYQAAARATKLIYQTD-PDMSREGGSIPVTITLQEAS-- 179
           N +S   Q G   +  +P +P YQAA+  T L Y  + P + R    +P T   + ++  
Sbjct: 171 NSISRDLQPGIHGYQPHPVYPRYQAASPLTYLGYSPELPQLHRP--PLPPTYFEKPSAEF 228

Query: 180 GKNVLLLPMGAGDDMAH 230
            ++  L  MG G D+AH
Sbjct: 229 PQSPNLYRMGPGPDVAH 245


>SB_49271| Best HMM Match : DUF916 (HMM E-Value=4.4)
          Length = 491

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 576 FCKKILTFFLNSLVLGILQRISR 644
           FC   L FF+N++++GI   +SR
Sbjct: 30  FCVMSLVFFMNNVIVGIASAVSR 52


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 532 LPPKIDLPPHDLTVLFPKRGYKIDCGSL 449
           +PPK++LP    TV +  +GY I   S+
Sbjct: 861 VPPKVELPSSFTTVWYSNQGYHIIASSI 888


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,491,578
Number of Sequences: 59808
Number of extensions: 414837
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)