Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30254
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical pr...    90   2e-18
AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical ...    89   3e-18
AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical ...    30   1.4  
AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical...    30   1.9  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    28   5.7  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      28   5.7  

>Z93386-5|CAB07646.1|  473|Caenorhabditis elegans Hypothetical
           protein R11H6.1 protein.
          Length = 473

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 43/85 (50%), Positives = 57/85 (67%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   GSPNKMSIT-AQSGRAWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEAS 179
           GSPN        S + W  + +  ++ A ARA K ++  +PD  REG SIP+T+T QE +
Sbjct: 369 GSPNVFKPRPGHSAKPWVVDVNDSNFLAGARAMKRVHGVEPDRIREGCSIPITLTFQELT 428

Query: 180 GKNVLLLPMGAGDDMAHSQNEKINV 254
           GK+VLLLP+GA DDMAHSQNEK N+
Sbjct: 429 GKSVLLLPIGAADDMAHSQNEKNNI 453



 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +2

Query: 257 NYIEGIKLFAAYLFEVG 307
           NY+EG+K   AY+ E+G
Sbjct: 455 NYVEGVKTLLAYIMELG 471


>AC024859-4|AAK29983.4|  472|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.11 protein.
          Length = 472

 Score = 89.0 bits (211), Expect = 3e-18
 Identities = 41/83 (49%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
 Frame = +3

Query: 6   SPNKMSITA-QSGRAWTENPDHPHYQAAARATKLIYQTDPDMSREGGSIPVTITLQEASG 182
           SPN   +T+   G  W  +    ++ A +RA + +Y   PD +REGGSIPVT+T+Q+ + 
Sbjct: 369 SPNTFKVTSGHGGMPWVADFRDANFSAGSRAIERVYGMTPDFTREGGSIPVTLTIQDLTK 428

Query: 183 KNVLLLPMGAGDDMAHSQNEKIN 251
             V+LLP+GA DDMAHSQNEKIN
Sbjct: 429 SPVMLLPIGASDDMAHSQNEKIN 451



 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 251 RCNYIEGIKLFAAYLFEV 304
           R N+++G+K+ AAYLFE+
Sbjct: 452 RDNFVKGMKVLAAYLFEL 469


>AL032651-1|CAB60580.1|  681|Caenorhabditis elegans Hypothetical
           protein Y6D1A.1 protein.
          Length = 681

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +2

Query: 38  RPRLDREPGPSALPGRRTRH*ADISDRSGHVPRRRFDPRHDHSAGGERQE 187
           R   DR P PS  PGR +R    ISDR G      F  +       +RQ+
Sbjct: 186 RMSFDRSPSPSRAPGRGSR----ISDRGGDYRDSGFSSQQSADPRSDRQD 231


>AL023835-15|CAA19492.2|  520|Caenorhabditis elegans Hypothetical
           protein Y37A1B.9 protein.
          Length = 520

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/27 (33%), Positives = 20/27 (74%)
 Frame = +2

Query: 599 FSQFVGLGHITKDIEICNFNVEDMKYI 679
           FS+F+ +GH+  +IE+ + N +D+ ++
Sbjct: 220 FSKFLSIGHLKGNIEVAHTNFKDLSFL 246


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 44  RLDREPGPSALPGRRTRH*ADISDRSG 124
           R  R P P+ LP RR RH +   DR G
Sbjct: 521 RRRRSPSPNKLPVRRRRHDSGSPDRDG 547


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 44  RLDREPGPSALPGRRTRH*ADISDRSG 124
           R  R P P+ LP RR RH +   DR G
Sbjct: 521 RRRRSPSPNKLPVRRRRHDSGSPDRDG 547


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,255,977
Number of Sequences: 27780
Number of extensions: 327743
Number of successful extensions: 866
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)