Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30254
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA...    28   5.3  
At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA...    28   5.3  
At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA...    28   5.3  
At3g18770.1 68416.m02382 expressed protein                             28   7.0  
At2g17790.1 68415.m02062 vacuolar protein sorting-associated pro...    28   7.0  
At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid t...    27   9.2  

>At5g51460.3 68418.m06381 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 362 NCLYSFSNLTETLYFMKTLVAWRR 433
           N  YS  + +E + F+K+LV W+R
Sbjct: 359 NAFYSLRDPSEVMEFLKSLVTWKR 382


>At5g51460.2 68418.m06380 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 384

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 362 NCLYSFSNLTETLYFMKTLVAWRR 433
           N  YS  + +E + F+K+LV W+R
Sbjct: 358 NAFYSLRDPSEVMEFLKSLVTWKR 381


>At5g51460.1 68418.m06379 trehalose-6-phosphate phosphatase (TPPA)
           identical to trehalose-6-phosphate phosphatase (AtTPPA)
           [Arabidopsis thaliana] GI:2944178
          Length = 385

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 362 NCLYSFSNLTETLYFMKTLVAWRR 433
           N  YS  + +E + F+K+LV W+R
Sbjct: 359 NAFYSLRDPSEVMEFLKSLVTWKR 382


>At3g18770.1 68416.m02382 expressed protein 
          Length = 625

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -3

Query: 454 SLFISIYPSPGYERFHKIKSFGKITKTIKTISYSFYV*HPRRPCLLGEFTDLEQVGGKQF 275
           SLF+ +   P Y+ F ++ S G+I K  K +        PR P ++  FT  E+   ++F
Sbjct: 189 SLFVMVRLLPAYKIFRELNSSGQIFK-FKLV--------PRVPSIVEPFTRKEEAEMQKF 239

Query: 274 YAFDVVATLIFSFC 233
            +F  V T+    C
Sbjct: 240 -SFTPVETICGRLC 252


>At2g17790.1 68415.m02062 vacuolar protein sorting-associated
           protein 35 family protein / VPS35 family protein similar
           to vacuolar protein sorting 35 [Mus musculus]
           GI:11875394; contains Pfam profile PF03635: Vacuolar
           protein sorting-associated protein 35
          Length = 830

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 330 RRGCYT*KLYEIVFIVLVILPKLFIL 407
           RRGC   +LYE+V     ILP+L++L
Sbjct: 83  RRGCSVIELYELVQHAGNILPRLYLL 108


>At1g62500.1 68414.m07052 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to auxin
           down regulated GB:X69640 GI:296442 from [Glycine max];
           contains Pfam profile PF00234: Protease inhibitor/seed
           storage/LTP family
          Length = 297

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 199 NSNTFLPLASCRVIVTGIEPPS 134
           N N F+PLA   +I  GI PPS
Sbjct: 268 NLNIFIPLALQALITCGINPPS 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,757
Number of Sequences: 28952
Number of extensions: 300180
Number of successful extensions: 733
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)