Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30252X
         (413 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2FAB5 Cluster: Rh183; n=2; Cercopithecine herpesvirus ...    31   9.3  
UniRef50_A5ULZ9 Cluster: Putative uncharacterized protein; n=1; ...    31   9.3  

>UniRef50_Q2FAB5 Cluster: Rh183; n=2; Cercopithecine herpesvirus
           8|Rep: Rh183 - Cercopithecine herpesvirus 8 (Rhesus
           cytomegalovirus)
          Length = 120

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 18  CYSCFDSATDTQTSCQLRITD---V*RHSLMYPKNTDRI 125
           C  C+D A+D    CQ R  D   V R+SL  PK+T  I
Sbjct: 30  CDECYDCASDGNVKCQSRKQDPVIVARYSLGIPKDTGMI 68


>UniRef50_A5ULZ9 Cluster: Putative uncharacterized protein; n=1;
           Methanobrevibacter smithii ATCC 35061|Rep: Putative
           uncharacterized protein - Methanobrevibacter smithii
           (strain PS / ATCC 35061 / DSM 861)
          Length = 171

 Score = 31.1 bits (67), Expect = 9.3
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -2

Query: 283 IKKRYLPNNIRQTLHCHLY*NFINLTAK 200
           + K+YL NN++ ++H  +Y NF+  TA+
Sbjct: 85  LAKKYLNNNVKNSIHIKVYSNFLKDTAE 112


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 315,151,103
Number of Sequences: 1657284
Number of extensions: 5088587
Number of successful extensions: 7669
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7669
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)