Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30252X
         (413 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical pr...    27   4.1  
Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical pr...    26   9.4  
AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.      26   9.4  

>U41264-4|AAA82424.1|  220|Caenorhabditis elegans Hypothetical
           protein F10E7.5 protein.
          Length = 220

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 41  DRYTN--VVPIKNY*RMTSFIDVSQKH*SNNRFNFAKDS 151
           D+Y N  +  I N  R T FI + QK+  N+RF F K++
Sbjct: 35  DQYKNLFIFTIANM-RSTRFIAIRQKYKENSRFFFGKNN 72


>Z83239-8|CAH60787.1|  311|Caenorhabditis elegans Hypothetical
           protein T09F5.16 protein.
          Length = 311

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 276 FLMQ*FYLSIICSSNLARHQ*SFHLHSP 359
           FL    Y+ I+ S   ARH  SF LH P
Sbjct: 181 FLCALLYIPILISIRKARHLSSFKLHRP 208


>Z81128-1|CAB03398.1|  568|Caenorhabditis elegans Hypothetical
           protein T23D8.1 protein.
          Length = 568

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 292 FICRLFVLVTLLATNNRFTF 351
           F+C LF LVT L   +RF +
Sbjct: 239 FVCSLFTLVTFLVDLSRFAY 258


>AF013953-1|AAC47750.1|  568|Caenorhabditis elegans mom-5 protein.
          Length = 568

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 292 FICRLFVLVTLLATNNRFTF 351
           F+C LF LVT L   +RF +
Sbjct: 239 FVCSLFTLVTFLVDLSRFAY 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,502,601
Number of Sequences: 27780
Number of extensions: 126193
Number of successful extensions: 218
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)