Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30251
(483 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7; Eukaryo... 139 3e-32
UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65; Eukary... 134 1e-30
UniRef50_P26781 Cluster: 40S ribosomal protein S11; n=73; Eukary... 113 2e-24
UniRef50_Q7XLC9 Cluster: OSJNBa0070C17.20 protein; n=11; Eukaryo... 111 1e-23
UniRef50_P79013 Cluster: 40S ribosomal protein S11; n=2; Dikarya... 110 1e-23
UniRef50_A0BVQ1 Cluster: Chromosome undetermined scaffold_130, w... 107 1e-22
UniRef50_Q9U9A0 Cluster: Putative ribosomal protein S11; n=8; Eu... 100 3e-20
UniRef50_Q42068 Cluster: Ribosomal protein 40S-S11; n=1; Arabido... 92 5e-18
UniRef50_Q4QCN7 Cluster: Ribosomal protein s11 homolog; n=16; Eu... 91 9e-18
UniRef50_Q15GB4 Cluster: 60S ribosomal protein 11; n=1; Rhodomon... 81 1e-14
UniRef50_Q8SS53 Cluster: 40S RIBOSOMAL PROTEIN S11; n=1; Encepha... 69 4e-11
UniRef50_UPI0000D9F1CD Cluster: PREDICTED: similar to ribosomal ... 64 1e-09
UniRef50_Q3LW88 Cluster: Ribosomal protein S11; n=1; Bigelowiell... 60 3e-08
UniRef50_Q8TW21 Cluster: 30S ribosomal protein S17P; n=24; Archa... 54 2e-06
UniRef50_Q2QAS1 Cluster: Ribosomal protein S17; n=2; environment... 53 3e-06
UniRef50_Q8PV41 Cluster: 30S ribosomal protein S17P; n=5; Methan... 47 2e-04
UniRef50_Q9YF81 Cluster: 30S ribosomal protein S17P; n=4; Thermo... 47 2e-04
UniRef50_P12741 Cluster: 30S ribosomal protein S17P; n=8; Euryar... 46 6e-04
UniRef50_Q74NJ4 Cluster: 30S ribosomal protein S17P; n=1; Nanoar... 45 0.001
UniRef50_Q9HIR8 Cluster: 30S ribosomal protein S17P; n=3; Euryar... 44 0.002
UniRef50_A3H7C0 Cluster: Ribosomal protein S17; n=4; Thermoprote... 42 0.007
UniRef50_Q8TP90 Cluster: Putative 30S ribosomal protein S17P-lik... 42 0.010
UniRef50_Q8ZWL3 Cluster: 30S ribosomal protein S17P; n=3; Pyroba... 40 0.022
UniRef50_A0RVY2 Cluster: Ribosomal protein S17; n=2; Thermoprote... 38 0.16
UniRef50_Q601K5 Cluster: 30S ribosomal protein S17; n=4; Mycopla... 35 0.84
UniRef50_UPI00001F8C9C Cluster: PREDICTED: hypothetical protein;... 34 1.5
UniRef50_A7BRH2 Cluster: Ribosomal protein S17; n=1; Beggiatoa s... 33 3.4
UniRef50_A1D100 Cluster: FAD binding domain protein; n=4; Tricho... 33 4.5
UniRef50_Q0F227 Cluster: Ion transport protein; n=1; Mariprofund... 32 7.8
>UniRef50_A6YPG5 Cluster: 40S ribosomal protein S11; n=7;
Eukaryota|Rep: 40S ribosomal protein S11 - Triatoma
infestans (Assassin bug)
Length = 194
Score = 139 bits (336), Expect = 3e-32
Identities = 69/84 (82%), Positives = 73/84 (86%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXR 182
+TEKAFQKQ VFL K K K +R +K+VGLGFKTPREAIEGTYIDKKCPFTGNVS R
Sbjct: 47 ETEKAFQKQPHVFLASKVSSK-KPLRRYKSVGLGFKTPREAIEGTYIDKKCPFTGNVSIR 105
Query: 183 GRILTGVVQKMKMQRTIVIRRDYL 254
GRILTGVVQKMKMQRTIVIRRDYL
Sbjct: 106 GRILTGVVQKMKMQRTIVIRRDYL 129
Score = 97.5 bits (232), Expect = 1e-19
Identities = 42/47 (89%), Positives = 46/47 (97%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
NRFEKRH+NMSVHLSPCFRDVEIGD+VT+GECRPLSKTVRFN LKV+
Sbjct: 136 NRFEKRHKNMSVHLSPCFRDVEIGDVVTVGECRPLSKTVRFNVLKVT 182
Score = 56.4 bits (130), Expect = 3e-07
Identities = 27/44 (61%), Positives = 34/44 (77%), Gaps = 4/44 (9%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTPRE 122
QTE++FQKQ T+FLNRK G+ K +R+ +NVGLGFKTPRE
Sbjct: 4 QTERSFQKQPTIFLNRKKGLGVKKKANALRYIRNVGLGFKTPRE 47
>UniRef50_P62280 Cluster: 40S ribosomal protein S11; n=65;
Eukaryota|Rep: 40S ribosomal protein S11 - Homo sapiens
(Human)
Length = 158
Score = 134 bits (323), Expect = 1e-30
Identities = 65/89 (73%), Positives = 75/89 (84%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKGGM-----KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
QTE+A+QKQ T+F N+K + K K R++KN+GLGFKTP+EAIEGTYIDKKCPFTG
Sbjct: 5 QTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKCPFTG 64
Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
NVS RGRIL+GVV KMKMQRTIVIRRDYL
Sbjct: 65 NVSIRGRILSGVVTKMKMQRTIVIRRDYL 93
Score = 96.7 bits (230), Expect = 2e-19
Identities = 42/47 (89%), Positives = 46/47 (97%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
NRFEKRH+NMSVHLSPCFRDV+IGDIVT+GECRPLSKTVRFN LKV+
Sbjct: 100 NRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVT 146
>UniRef50_P26781 Cluster: 40S ribosomal protein S11; n=73;
Eukaryota|Rep: 40S ribosomal protein S11 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 156
Score = 113 bits (272), Expect = 2e-24
Identities = 55/88 (62%), Positives = 64/88 (72%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXR 182
Q+E+AFQKQ +F N K ++ R +KN GLGFKTP+ AIEG+YIDKKCPFTG VS R
Sbjct: 8 QSERAFQKQPHIFNNPKVKTSKRTKRWYKNAGLGFKTPKTAIEGSYIDKKCPFTGLVSIR 67
Query: 183 GRILTGVVQKMKMQRTIVIRRDYLTTYP 266
G+ILTG V KM RTIVIRR YL P
Sbjct: 68 GKILTGTVVSTKMHRTIVIRRAYLHYIP 95
Score = 77.8 bits (183), Expect = 1e-13
Identities = 33/47 (70%), Positives = 43/47 (91%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
NR+EKRH+N+ VH+SP FR V++GDIVT+G+CRP+SKTVRFN +KVS
Sbjct: 98 NRYEKRHKNVPVHVSPAFR-VQVGDIVTVGQCRPISKTVRFNVVKVS 143
>UniRef50_Q7XLC9 Cluster: OSJNBa0070C17.20 protein; n=11;
Eukaryota|Rep: OSJNBa0070C17.20 protein - Oryza sativa
subsp. japonica (Rice)
Length = 185
Score = 111 bits (266), Expect = 1e-23
Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
VS RGRI+ G KM RTI++RR+YL
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYL 92
Score = 68.9 bits (161), Expect = 6e-11
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN LKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>UniRef50_P79013 Cluster: 40S ribosomal protein S11; n=2;
Dikarya|Rep: 40S ribosomal protein S11 -
Schizosaccharomyces pombe (Fission yeast)
Length = 152
Score = 110 bits (265), Expect = 1e-23
Identities = 55/88 (62%), Positives = 63/88 (71%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXR 182
Q+E+AFQKQ +F N K G R R +K+VGLGFKTP EAI G Y+DKKCPF G VS R
Sbjct: 8 QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64
Query: 183 GRILTGVVQKMKMQRTIVIRRDYLTTYP 266
GRILTG V KM RTI+IRR+YL P
Sbjct: 65 GRILTGTVVSTKMHRTIIIRREYLHFIP 92
Score = 72.5 bits (170), Expect = 5e-12
Identities = 30/46 (65%), Positives = 40/46 (86%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
NR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFN L+V
Sbjct: 95 NRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139
>UniRef50_A0BVQ1 Cluster: Chromosome undetermined scaffold_130,
whole genome shotgun sequence; n=18; Eukaryota|Rep:
Chromosome undetermined scaffold_130, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 188
Score = 107 bits (258), Expect = 1e-22
Identities = 52/87 (59%), Positives = 64/87 (73%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKGGMKRKD---MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNV 173
+ ++AFQKQ +F N K + +K +R+ K VGLGFK P++AIEG YIDKKCPFTGNV
Sbjct: 34 KNQRAFQKQEGIFQNSKKLLAKKTSKGVRYWKEVGLGFKVPKDAIEGNYIDKKCPFTGNV 93
Query: 174 SXRGRILTGVVQKMKMQRTIVIRRDYL 254
S RG IL G+V KM RTI+IRRDYL
Sbjct: 94 SVRGAILKGIVISTKMTRTIIIRRDYL 120
Score = 74.5 bits (175), Expect = 1e-12
Identities = 33/46 (71%), Positives = 38/46 (82%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
NR+EKRHRN+ VH+SP F V+ GDIV G+CRPLSKTVRFN LKV
Sbjct: 127 NRYEKRHRNVPVHISPAFGPVKEGDIVVCGQCRPLSKTVRFNVLKV 172
>UniRef50_Q9U9A0 Cluster: Putative ribosomal protein S11; n=8;
Eukaryota|Rep: Putative ribosomal protein S11 - Physarum
polycephalum (Slime mold)
Length = 158
Score = 99.5 bits (237), Expect = 3e-20
Identities = 48/89 (53%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKG----GMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGN 170
QT +QKQ +F+ +K +K+ D R+ + VGLG+KTP+ A+EGT++D KCPFTGN
Sbjct: 6 QTGLFYQKQKPIFVGKKRLLGLKLKKSDTRYVRQVGLGYKTPKAALEGTFVDDKCPFTGN 65
Query: 171 VSXRGRILTGVVQKM-KMQRTIVIRRDYL 254
VS RGRIL GVV KM+RT+V+RR+YL
Sbjct: 66 VSIRGRILRGVVVSAGKMKRTVVVRRNYL 94
Score = 69.7 bits (163), Expect = 3e-11
Identities = 33/45 (73%), Positives = 36/45 (80%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R+EKRH N SVH SP DV+ GD VT+GECRPLSKTVRFN LKV
Sbjct: 102 RYEKRHTNFSVHCSPAL-DVKEGDTVTVGECRPLSKTVRFNVLKV 145
>UniRef50_Q42068 Cluster: Ribosomal protein 40S-S11; n=1;
Arabidopsis thaliana|Rep: Ribosomal protein 40S-S11 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 103
Score = 92.3 bits (219), Expect = 5e-18
Identities = 42/70 (60%), Positives = 51/70 (72%)
Frame = +3
Query: 45 NRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQ 224
N +G K R KN+GLGFKTPREAI+G Y+DKKCPFTG VS RGRIL + + +MQ
Sbjct: 31 NLEGKRPGKVERFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILVWYLPQCEMQ 90
Query: 225 RTIVIRRDYL 254
TI++ RDYL
Sbjct: 91 STIIVARDYL 100
>UniRef50_Q4QCN7 Cluster: Ribosomal protein s11 homolog; n=16;
Eukaryota|Rep: Ribosomal protein s11 homolog -
Leishmania major
Length = 141
Score = 91.5 bits (217), Expect = 9e-18
Identities = 42/70 (60%), Positives = 51/70 (72%)
Frame = +3
Query: 45 NRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQ 224
+RK K +R+ K +GLGFKTP +A+ G YID+KCPFT NV RGRIL GVV KM
Sbjct: 5 SRKHVNKSGHIRYSKKIGLGFKTPAKALNGKYIDRKCPFTSNVVIRGRILRGVVHSTKMH 64
Query: 225 RTIVIRRDYL 254
RTI+IRR+YL
Sbjct: 65 RTIIIRRNYL 74
Score = 60.5 bits (140), Expect = 2e-08
Identities = 26/45 (57%), Positives = 37/45 (82%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R++KRH++++VH SP F D + GD V IG+CRPLSKT+R+N L+V
Sbjct: 82 RYQKRHKSLAVHCSPAF-DPKQGDEVVIGQCRPLSKTIRYNVLEV 125
>UniRef50_Q15GB4 Cluster: 60S ribosomal protein 11; n=1; Rhodomonas
salina|Rep: 60S ribosomal protein 11 - Rhodomonas salina
(Cryptomonas salina)
Length = 145
Score = 81.0 bits (191), Expect = 1e-14
Identities = 35/65 (53%), Positives = 44/65 (67%)
Frame = +3
Query: 60 MKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVI 239
+ +K KN+G+G K P EAI Y DKKCPF G +S RGRIL G V KM+R+++I
Sbjct: 16 LTKKKKNSFKNIGMGLKAPLEAINNNYFDKKCPFRGLISIRGRILRGTVISTKMKRSVII 75
Query: 240 RRDYL 254
RRDYL
Sbjct: 76 RRDYL 80
Score = 72.9 bits (171), Expect = 3e-12
Identities = 31/45 (68%), Positives = 39/45 (86%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
RFEKRH+N+ H SPCFR V+ GD+VTIG+CRPLSKT+RFN L++
Sbjct: 88 RFEKRHKNIPCHCSPCFR-VQEGDLVTIGQCRPLSKTIRFNVLRI 131
>UniRef50_Q8SS53 Cluster: 40S RIBOSOMAL PROTEIN S11; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S11
- Encephalitozoon cuniculi
Length = 156
Score = 69.3 bits (162), Expect = 4e-11
Identities = 34/81 (41%), Positives = 46/81 (56%)
Frame = +3
Query: 12 KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRI 191
K F +Q V + + R GFK P A YIDKKCPFTG+V+ RGR+
Sbjct: 8 KVFPRQTGVCAKPYASHEEQPKRRVNAEVCGFKAPETAYTRQYIDKKCPFTGDVNVRGRL 67
Query: 192 LTGVVQKMKMQRTIVIRRDYL 254
GVV+KMK ++TIV+ +Y+
Sbjct: 68 FKGVVKKMKAEKTIVVVANYV 88
Score = 52.0 bits (119), Expect = 7e-06
Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRD-VEIGDIVTIGECRPLSKT 385
R+ +RH N SVH+SPCF + +GD V GE RPLSKT
Sbjct: 96 RYSRRHTNFSVHMSPCFEGMINVGDTVICGETRPLSKT 133
>UniRef50_UPI0000D9F1CD Cluster: PREDICTED: similar to ribosomal
protein S11; n=1; Macaca mulatta|Rep: PREDICTED: similar
to ribosomal protein S11 - Macaca mulatta
Length = 84
Score = 64.5 bits (150), Expect = 1e-09
Identities = 28/39 (71%), Positives = 32/39 (82%)
Frame = +2
Query: 296 NMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
NMS+H S CFRDV IG IVT+GEC+PLSKTVRF KV+
Sbjct: 34 NMSIHFSTCFRDVHIGHIVTVGECQPLSKTVRFIMFKVT 72
>UniRef50_Q3LW88 Cluster: Ribosomal protein S11; n=1; Bigelowiella
natans|Rep: Ribosomal protein S11 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 119
Score = 60.1 bits (139), Expect = 3e-08
Identities = 28/46 (60%), Positives = 34/46 (73%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
NRF KRH+N+ HLS ++GDIV I ECRP+SKTVRFN +KV
Sbjct: 67 NRFVKRHKNIPAHLSNLLT-CKVGDIVIIAECRPISKTVRFNVIKV 111
Score = 56.8 bits (131), Expect = 2e-07
Identities = 24/38 (63%), Positives = 31/38 (81%)
Frame = +3
Query: 141 IDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
IDKKCPF G ++ RGRIL G V+K+KM+ T++IR DYL
Sbjct: 23 IDKKCPFYGKINLRGRILRGKVRKIKMKSTVIIRIDYL 60
>UniRef50_Q8TW21 Cluster: 30S ribosomal protein S17P; n=24;
Archaea|Rep: 30S ribosomal protein S17P - Methanopyrus
kandleri
Length = 118
Score = 54.0 bits (124), Expect = 2e-06
Identities = 25/60 (41%), Positives = 36/60 (60%)
Frame = +3
Query: 72 DMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDY 251
+ R K++GLG K PR + D CPF GN+ RG IL GVV +M +T+++ R+Y
Sbjct: 4 EYRMAKDIGLGVKPPRRECD----DPNCPFHGNLRVRGMILEGVVVSDRMDKTVIVEREY 59
Score = 42.3 bits (95), Expect = 0.006
Identities = 21/45 (46%), Positives = 27/45 (60%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R+E+R + H PC D + GD V I ECRPLSKT F ++V
Sbjct: 68 RWERRRSRIPAHNPPCI-DAQEGDKVRIAECRPLSKTKSFVVIEV 111
>UniRef50_Q2QAS1 Cluster: Ribosomal protein S17; n=2; environmental
samples|Rep: Ribosomal protein S17 - uncultured marine
group II euryarchaeote HF70_59C08
Length = 111
Score = 53.2 bits (122), Expect = 3e-06
Identities = 23/40 (57%), Positives = 27/40 (67%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 394
R+EKR R + HL C DV +GD V I ECRPLSKT+ F
Sbjct: 63 RYEKRTRRYAAHLPSCIGDVNVGDSVRIMECRPLSKTITF 102
Score = 42.7 bits (96), Expect = 0.004
Identities = 14/37 (37%), Positives = 28/37 (75%)
Frame = +3
Query: 144 DKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
D+ CPF G++ RG+I+ G + K+ MQ++I++ R+++
Sbjct: 19 DENCPFYGSLRLRGQIIEGTIAKVGMQKSIIVEREHI 55
>UniRef50_Q8PV41 Cluster: 30S ribosomal protein S17P; n=5;
Methanomicrobia|Rep: 30S ribosomal protein S17P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 109
Score = 47.2 bits (107), Expect = 2e-04
Identities = 22/56 (39%), Positives = 30/56 (53%)
Frame = +3
Query: 87 KNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
+++GL P E + Y CPF G + RG+IL G V KM T+VI R Y+
Sbjct: 3 RDIGLNIPAPSEECDDAY----CPFHGTLPVRGQILVGTVVSSKMDNTVVIERQYM 54
Score = 43.6 bits (98), Expect = 0.002
Identities = 20/40 (50%), Positives = 25/40 (62%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 394
R+EKR + H C ++GDIVTI ECRP+SKT F
Sbjct: 62 RYEKRRSKIHAHNPACI-SAKVGDIVTIVECRPISKTKSF 100
>UniRef50_Q9YF81 Cluster: 30S ribosomal protein S17P; n=4;
Thermoprotei|Rep: 30S ribosomal protein S17P - Aeropyrum
pernix
Length = 114
Score = 47.2 bits (107), Expect = 2e-04
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
NR+E+R + + HL C V+ GD+V IGE P+SKTV+F L V
Sbjct: 67 NRYERRSKKIHAHLPDCI-SVKEGDVVVIGETMPISKTVKFTVLGV 111
Score = 36.3 bits (80), Expect = 0.36
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +3
Query: 144 DKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
D CP+ G + RG +L GVV K + +R +V++ YL
Sbjct: 24 DPNCPWHGTLRVRGVLLEGVVAKARARRMVVVQHVYL 60
>UniRef50_P12741 Cluster: 30S ribosomal protein S17P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S17P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 112
Score = 45.6 bits (103), Expect = 6e-04
Identities = 22/58 (37%), Positives = 32/58 (55%)
Frame = +3
Query: 93 VGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYLTTYP 266
+GL + P E T D+ CPF G +S RG+ L G V M++T+V+ R+Y P
Sbjct: 3 LGLNVQEPEE----TCADQNCPFHGELSVRGQTLNGEVASTDMEKTVVVEREYDVKVP 56
Score = 44.0 bits (99), Expect = 0.002
Identities = 20/38 (52%), Positives = 24/38 (63%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKT 385
+RF KR + H C D+ +GD VTI ECRPLSKT
Sbjct: 59 DRFMKRRSRVPAHAPDCL-DLAVGDTVTIAECRPLSKT 95
>UniRef50_Q74NJ4 Cluster: 30S ribosomal protein S17P; n=1;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S17P -
Nanoarchaeum equitans
Length = 113
Score = 44.8 bits (101), Expect = 0.001
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 394
R+E R ++ +L C +D++ GD V IGE RPLSKT F
Sbjct: 60 RYELRRTRITAYLPECLKDIKEGDYVLIGETRPLSKTKHF 99
>UniRef50_Q9HIR8 Cluster: 30S ribosomal protein S17P; n=3;
Euryarchaeota|Rep: 30S ribosomal protein S17P -
Thermoplasma acidophilum
Length = 109
Score = 44.0 bits (99), Expect = 0.002
Identities = 22/60 (36%), Positives = 32/60 (53%)
Frame = +3
Query: 87 KNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYLTTYP 266
+N+GL K P E D CP+ G +S RG++LTG V M ++ V+ R+Y P
Sbjct: 4 RNIGLDVKLP----ESECNDPHCPYHGKLSVRGQVLTGKVVSANMTKSAVVAREYQQYIP 59
>UniRef50_A3H7C0 Cluster: Ribosomal protein S17; n=4;
Thermoprotei|Rep: Ribosomal protein S17 - Caldivirga
maquilingensis IC-167
Length = 152
Score = 41.9 bits (94), Expect = 0.007
Identities = 18/40 (45%), Positives = 26/40 (65%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRF 394
R+ ++ RN+ HL C + V +GD V IGE RPL+K + F
Sbjct: 91 RYIRKRRNIHAHLPSCIK-VNVGDYVVIGETRPLAKFISF 129
>UniRef50_Q8TP90 Cluster: Putative 30S ribosomal protein S17P-like;
n=1; Methanosarcina acetivorans|Rep: Putative 30S
ribosomal protein S17P-like - Methanosarcina acetivorans
Length = 486
Score = 41.5 bits (93), Expect = 0.010
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Frame = +3
Query: 87 KNVGL-GFKTPREAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRR 245
+++G+ G K P E D +CPF G +S RG+IL G+V KM + IV++R
Sbjct: 2 RDIGINGIKLPTEDCN----DPECPFHGKLSVRGQILKGIVISDKMTKNIVMKR 51
Score = 36.7 bits (81), Expect = 0.27
Identities = 18/42 (42%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +2
Query: 275 RFEKRHRNMS-VHL-SPCFRDVEIGDIVTIGECRPLSKTVRF 394
+++++ R S +H SP + +IGDI+TI ECRPL+K F
Sbjct: 59 KYQRKQRVSSKIHAYSPPCMEAKIGDIITIAECRPLNKGSSF 100
>UniRef50_Q8ZWL3 Cluster: 30S ribosomal protein S17P; n=3;
Pyrobaculum|Rep: 30S ribosomal protein S17P -
Pyrobaculum aerophilum
Length = 123
Score = 40.3 bits (90), Expect = 0.022
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = +2
Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTV 388
NR+E+R + M V + C +V+ GD V I E RPLSKT+
Sbjct: 63 NRYERRRKRMRVRVPECI-EVKPGDKVIIAETRPLSKTI 100
>UniRef50_A0RVY2 Cluster: Ribosomal protein S17; n=2;
Thermoprotei|Rep: Ribosomal protein S17 - Cenarchaeum
symbiosum
Length = 109
Score = 37.5 bits (83), Expect = 0.16
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +3
Query: 87 KNVGLGFKTP-REAIEGTYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRD 248
+ +GL P REA +G DK PF G + RG++ G + K + T+VI ++
Sbjct: 3 REIGLPVPAPSREAADG---DKNNPFNGTLPIRGKLFEGTIVSAKARSTVVIEKE 54
>UniRef50_Q601K5 Cluster: 30S ribosomal protein S17; n=4; Mycoplasma
hyopneumoniae|Rep: 30S ribosomal protein S17 -
Mycoplasma hyopneumoniae (strain 232)
Length = 98
Score = 35.1 bits (77), Expect = 0.84
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
RF+KR + + H E+GD V I ECRP+SKT F ++V
Sbjct: 50 RFKKR-KKFNTHDEKNL--AEVGDFVKIAECRPISKTKHFRLVEV 91
>UniRef50_UPI00001F8C9C Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 147
Score = 34.3 bits (75), Expect = 1.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 48 RKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRILTG 200
R G +R+D + H N G RE + GT+ K TG S G +TG
Sbjct: 39 RHGIARRRDAQQHGNTSHGHTAAREHVTGTHNSKGSHVTGTHSSTGTHVTG 89
>UniRef50_A7BRH2 Cluster: Ribosomal protein S17; n=1; Beggiatoa sp.
PS|Rep: Ribosomal protein S17 - Beggiatoa sp. PS
Length = 100
Score = 33.1 bits (72), Expect = 3.4
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 293 RNMSVHLSPCFRDVEIGDIVTIGECRPLSKT 385
R+ +H+ ++GDIV I +CRP+SKT
Sbjct: 55 RSTKLHVHDEENTCQVGDIVAISQCRPISKT 85
>UniRef50_A1D100 Cluster: FAD binding domain protein; n=4;
Trichocomaceae|Rep: FAD binding domain protein -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 1100
Score = 32.7 bits (71), Expect = 4.5
Identities = 21/63 (33%), Positives = 25/63 (39%)
Frame = -2
Query: 239 DHDSSLHLHFLXXXXXXXXXXXNVTSEGTLLVNVGTLNRLSGSFEA*TNILMVTHVLPLH 60
D D S LH L T EG L N G+L L F A + + + PLH
Sbjct: 518 DEDPSARLHLLNFLPQLISPLLIYTIEGYRLGNQGSLLALPSLFTAGMQVQGIGRMAPLH 577
Query: 59 ATF 51
A F
Sbjct: 578 AIF 580
>UniRef50_Q0F227 Cluster: Ion transport protein; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Ion transport protein -
Mariprofundus ferrooxydans PV-1
Length = 256
Score = 31.9 bits (69), Expect = 7.8
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 46 TGKVA*RGRTCVTIRMLV*ASKLPERRLRVPTLTRSVPSL 165
TG++A R +R+L + +PE RL V TL RS+PS+
Sbjct: 83 TGELAMLARLARLLRVLRLITAIPELRLIVATLMRSIPSM 122
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 435,126,448
Number of Sequences: 1657284
Number of extensions: 7787580
Number of successful extensions: 16740
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16720
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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