Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30251
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac...   110   9e-26
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch...   110   9e-26
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17...    31   0.091
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   4.5  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    25   4.5  
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1...    25   6.0  

>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  110 bits (265), Expect = 9e-26
 Identities = 55/88 (62%), Positives = 63/88 (71%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXR 182
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VS R
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 183 GRILTGVVQKMKMQRTIVIRRDYLTTYP 266
           GRILTG V   KM RTI+IRR+YL   P
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 30/46 (65%), Positives = 40/46 (86%)
 Frame = +2

Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
           NR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFN L+V
Sbjct: 95  NRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
           S11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 152

 Score =  110 bits (265), Expect = 9e-26
 Identities = 55/88 (62%), Positives = 63/88 (71%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXR 182
           Q+E+AFQKQ  +F N K G  R   R +K+VGLGFKTP EAI G Y+DKKCPF G VS R
Sbjct: 8   QSERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIR 64

Query: 183 GRILTGVVQKMKMQRTIVIRRDYLTTYP 266
           GRILTG V   KM RTI+IRR+YL   P
Sbjct: 65  GRILTGTVVSTKMHRTIIIRREYLHFIP 92



 Score = 72.5 bits (170), Expect = 3e-14
 Identities = 30/46 (65%), Positives = 40/46 (86%)
 Frame = +2

Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
           NR+EKRH+N++ H+SP FR +  GD+VT+G+CRPLSKTVRFN L+V
Sbjct: 95  NRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVLRV 139


>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 90

 Score = 31.1 bits (67), Expect = 0.091
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 338 IGDIVTIGECRPLSKTVRFNNLKV 409
           +GD VTI  CRP S T RF  +K+
Sbjct: 51  VGDAVTIQPCRPRSATKRFEIIKI 74


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +3

Query: 135 TYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTI-VIRRDYLTTY 263
           T I  KCPF  ++S  G+     +     QR    +R  +L+ Y
Sbjct: 36  TSIHDKCPFKQHISENGQNFGSAISSNISQRNFKTLRASHLSQY 79


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +3

Query: 141 IDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYLTTYPNTI 275
           I+ KC    +     R   G+++++++ RT++ + + L TY N I
Sbjct: 55  IESKCNELSSEISLLRKRLGIIEEIEIPRTLIDQYECLVTYHNGI 99


>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
           Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 135 YPQSPLWEF*SLNQHSYGDACPSSSCHLSCSGK 37
           YP    W+     +++    CPS S HL+ S K
Sbjct: 299 YPSQEAWDMRLTIENTLAIKCPSISTHLAGSKK 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,831,929
Number of Sequences: 5004
Number of extensions: 33412
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)