Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV30251
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0920 - 22603868-22603964,22604110-22604222,22604281-226044... 113 9e-26
04_04_1134 + 31137326-31137337,31137964-31138004,31138089-311381... 113 9e-26
07_03_0919 - 22594980-22595111,22595398-22595427,22595522-225955... 111 2e-25
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407... 111 4e-25
04_04_0417 - 25052305-25052398,25052583-25052672,25052740-250529... 109 1e-24
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 99 2e-21
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 32 0.28
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 29 1.5
11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591 28 3.4
10_08_0909 - 21487512-21487564,21487938-21488292,21489433-214894... 28 3.4
08_02_1393 - 26706198-26706592,26707055-26707301,26707407-267082... 27 7.9
>07_03_0920 -
22603868-22603964,22604110-22604222,22604281-22604429,
22604732-22604832,22604917-22604957,22605584-22605595
Length = 170
Score = 113 bits (271), Expect = 9e-26
Identities = 60/107 (56%), Positives = 70/107 (65%), Gaps = 5/107 (4%)
Frame = +3
Query: 3 QTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYLTTYPNTIGSRNGTGICPC 308
VS RGRI+ G KM RTI++RR+YL R G + PC
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN LKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>04_04_1134 +
31137326-31137337,31137964-31138004,31138089-31138189,
31138489-31138637,31138696-31138808,31138954-31139050
Length = 170
Score = 113 bits (271), Expect = 9e-26
Identities = 60/107 (56%), Positives = 70/107 (65%), Gaps = 5/107 (4%)
Frame = +3
Query: 3 QTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYLTTYPNTIGSRNGTGICPC 308
VS RGRI+ G KM RTI++RR+YL R G + PC
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKY--QRQGANLPPC 108
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN LKV
Sbjct: 109 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 152
>07_03_0919 -
22594980-22595111,22595398-22595427,22595522-22595587,
22596021-22596107,22596868-22596921,22597696-22597762,
22598099-22598215,22598536-22598637,22598784-22598902,
22598966-22599049,22599220-22599354,22599470-22599505,
22599581-22599700,22600557-22600645,22601507-22601596,
22601629-22601802,22602135-22602235,22602323-22602363,
22602872-22602883
Length = 551
Score = 111 bits (268), Expect = 2e-25
Identities = 63/118 (53%), Positives = 74/118 (62%), Gaps = 5/118 (4%)
Frame = +3
Query: 3 QTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYLTTYPNTIGSRNGTGICPCICRLASGTWRL 341
VS RGRI+ G KM RTI++RR+YL N G C+ R T+RL
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRQVNNYGFYLCM-RRGIPTFRL 120
>04_04_1135 +
31140032-31140043,31140552-31140592,31140680-31140780,
31141113-31141419,31141565-31141661
Length = 185
Score = 111 bits (266), Expect = 4e-25
Identities = 56/89 (62%), Positives = 65/89 (73%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTEKAFQKQATVFLN-RKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
QTEKAF KQ VFL+ +K G +K R K++GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 4 QTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
VS RGRI+ G KM RTI++RR+YL
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYL 92
Score = 68.9 bits (161), Expect = 2e-12
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN LKV
Sbjct: 124 RYEKRHSNIPAHVSPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 167
>04_04_0417 -
25052305-25052398,25052583-25052672,25052740-25052905,
25053547-25053647,25053735-25053775,25054170-25054181
Length = 167
Score = 109 bits (262), Expect = 1e-24
Identities = 56/89 (62%), Positives = 62/89 (69%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 QTEKAFQKQATVFLNRKGGMKRKDM-----RHHKNVGLGFKTPREAIEGTYIDKKCPFTG 167
QTE+AF KQ VFL K K K R KN+GLGFKTPREAIEGTYIDKKCPFTG
Sbjct: 4 QTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTG 63
Query: 168 NVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
VS RGRI+ G KM RTI++RR+YL
Sbjct: 64 TVSIRGRIIAGTCHSAKMNRTIIVRRNYL 92
Score = 67.3 bits (157), Expect = 6e-12
Identities = 31/44 (70%), Positives = 36/44 (81%)
Frame = +2
Query: 278 FEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN LKV
Sbjct: 108 YEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKV 150
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 98.7 bits (235), Expect = 2e-21
Identities = 48/81 (59%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Frame = +3
Query: 24 KQATVFLNRKGGMKRKD----MRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSXRGRI 191
+Q F +K G +K R KN+GLGFKTPREAIEGTYIDKKCPFTG VS RGRI
Sbjct: 3 EQVLDFSPKKSGKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI 62
Query: 192 LTGVVQKMKMQRTIVIRRDYL 254
+ G KM RTI++RR+YL
Sbjct: 63 IAGTCHSAKMNRTIIVRRNYL 83
Score = 68.5 bits (160), Expect = 3e-12
Identities = 31/45 (68%), Positives = 37/45 (82%)
Frame = +2
Query: 275 RFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKV 409
R+EKRH N+ H+SPCFR V+ GD V IG+CRPLSKTVRFN +KV
Sbjct: 91 RYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVIKV 134
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 31.9 bits (69), Expect = 0.28
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -2
Query: 380 WTKVCIRRSLQYHQSPRP*SKATNARTYSCAVSRTY 273
W C RR Y +SP P + R+YS + SR+Y
Sbjct: 129 WKNRCYRRGRSYSRSPSPRRGRSRGRSYSRSRSRSY 164
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -2
Query: 146 VNVGTLNRLSGSFEA*TNILMVTHVLPLHATFPVQENGGLFLKR 15
++ G L ++SGSF+ T++ + LPL+ V E FL+R
Sbjct: 772 ISEGELKQISGSFKGTTSLRTLLMELPLYRGLEVLELRSFFLER 815
>11_04_0054 - 12895574-12895840,12906985-12908121,12908274-12908591
Length = 573
Score = 28.3 bits (60), Expect = 3.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 83 VTHVLPLHATFPVQENGGLFLKRFLCL 3
V H +P+H T+ ++ L+L R +CL
Sbjct: 293 VAHFIPVHTTYSGKKLAELYLARIMCL 319
>10_08_0909 -
21487512-21487564,21487938-21488292,21489433-21489488,
21491640-21491778,21493519-21493674,21493983-21494171,
21494403-21494444,21494445-21494699
Length = 414
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -3
Query: 436 RLLRALAI*NFQIIESNCFGQRSAFADRYNITNLHVPEARRQMHGHIPVPFLE 278
R + +L + N Q + C G +RY T E HG + +P ++
Sbjct: 5 RTIGSLPVPNVQALAGTCNGSDEQIPERYIRTEATCEEVISNYHGDMAIPIID 57
>08_02_1393 -
26706198-26706592,26707055-26707301,26707407-26708249,
26708420-26709091
Length = 718
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 115 PERRLRVPTLTRSVPSLVTF 174
PERR VP RS+ LVTF
Sbjct: 155 PERRRNVPVAQRSLEGLVTF 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,831,139
Number of Sequences: 37544
Number of extensions: 218651
Number of successful extensions: 448
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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