Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30251
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)             122   2e-28
SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)         32   0.22 
SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)         27   8.1  

>SB_26249| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 171

 Score =  122 bits (293), Expect = 2e-28
 Identities = 64/100 (64%), Positives = 75/100 (75%), Gaps = 16/100 (16%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRKGGM----KRKDMRHHKNVGLGFKTP------------REAIEG 134
           QTE+A+QKQA +F NRK  +    K+KD+R  +NVGLGFKTP            REAIEG
Sbjct: 4   QTERAYQKQAPIFQNRKRVLGQVTKKKDLRFVRNVGLGFKTPKDVCNCTYLLPEREAIEG 63

Query: 135 TYIDKKCPFTGNVSXRGRILTGVVQKMKMQRTIVIRRDYL 254
           TYIDKKCPFTGNVS RGRILTG+ + MKM+RTI+IRRDYL
Sbjct: 64  TYIDKKCPFTGNVSIRGRILTGICRSMKMKRTIIIRRDYL 103



 Score = 87.0 bits (206), Expect = 7e-18
 Identities = 34/47 (72%), Positives = 43/47 (91%)
 Frame = +2

Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
           NRFEKRH+N++ H SPCFRD+ +GD++T+G+CRPLSKTVRFN LKVS
Sbjct: 110 NRFEKRHKNLAAHCSPCFRDIALGDLITVGQCRPLSKTVRFNVLKVS 156


>SB_17063| Best HMM Match : Ribosomal_S17 (HMM E-Value=5.7e-06)
          Length = 73

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +2

Query: 341 GDIVTIGECRPLSKTVRFN 397
           GD+V I ECRPLSK  +FN
Sbjct: 29  GDVVRIKECRPLSKMKKFN 47


>SB_39731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 144 QCRYPQSPLWEF*SLNQHSYGDACP 70
           +C   QS LWE  SL QH Y +  P
Sbjct: 505 KCNALQSSLWELKSLQQHYYPEVSP 529


>SB_51828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 857

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 334 HVPEARRQMHGHIPVPFLEP 275
           HV +A R  HG++P+P L P
Sbjct: 82  HVDQACRSFHGNLPLPVLAP 101


>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
          Length = 378

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
 Frame = +3

Query: 12  KAFQKQATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKK-CPFTGNVSXRGR 188
           +A   + T  ++RK   K+K+ +  KN+    K PR     T++  +     G V+ R R
Sbjct: 216 QALAMKVTSRVSRKIDSKKKNKQRRKNLRALRKAPRRPAPVTHLSARGADVDGAVALRAR 275

Query: 189 ILTGVVQK 212
              G  Q+
Sbjct: 276 ARAGNAQR 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,565
Number of Sequences: 59808
Number of extensions: 252023
Number of successful extensions: 531
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)