Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV30251
         (483 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC...   125   4e-29
AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA...   125   4e-29
AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB...   115   4e-26

>AE013599-1421|AAM71028.1|  155|Drosophila melanogaster CG8857-PC,
           isoform C protein.
          Length = 155

 Score =  125 bits (301), Expect = 4e-29
 Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNV 173
           Q E+AFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+TG+V
Sbjct: 4   QNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDV 63

Query: 174 SXRGRILTGVVQKMKMQRTIVIRRDYL 254
             RGRILTGVV+K KMQRTIVIRRDYL
Sbjct: 64  RIRGRILTGVVRKAKMQRTIVIRRDYL 90



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +2

Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
           +RFEKRHRNMSVH SP FRDVE GDIVTIGECRPLSKTVRFN LKVS
Sbjct: 97  SRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVS 143


>AE013599-1420|AAF58552.1|  155|Drosophila melanogaster CG8857-PA,
           isoform A protein.
          Length = 155

 Score =  125 bits (301), Expect = 4e-29
 Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 3/87 (3%)
 Frame = +3

Query: 3   QTEKAFQKQATVFLNRK---GGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNV 173
           Q E+AFQKQ  V LNRK   G  K+K +R  ++VGLGFKTPREAI+GTYIDKKCP+TG+V
Sbjct: 4   QNERAFQKQFGVNLNRKVKPGITKKKLLRRSRDVGLGFKTPREAIDGTYIDKKCPWTGDV 63

Query: 174 SXRGRILTGVVQKMKMQRTIVIRRDYL 254
             RGRILTGVV+K KMQRTIVIRRDYL
Sbjct: 64  RIRGRILTGVVRKAKMQRTIVIRRDYL 90



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +2

Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
           +RFEKRHRNMSVH SP FRDVE GDIVTIGECRPLSKTVRFN LKVS
Sbjct: 97  SRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVS 143


>AE013599-1422|AAM71029.1|  154|Drosophila melanogaster CG8857-PB,
           isoform B protein.
          Length = 154

 Score =  115 bits (276), Expect = 4e-26
 Identities = 55/85 (64%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
 Frame = +3

Query: 3   QTEKAFQKQ-ATVFLNRKGGMKRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFTGNVSX 179
           QTE++F+KQ A V + RK    +K  R ++ +GLGF+ P EAI+GTYIDKKCP+TG+V  
Sbjct: 5   QTERSFRKQHAVVVVRRKSPNLKKRPRFYRQIGLGFRAPAEAIDGTYIDKKCPWTGDVRI 64

Query: 180 RGRILTGVVQKMKMQRTIVIRRDYL 254
           RGRILTGVV+K KMQRTIVIRRDYL
Sbjct: 65  RGRILTGVVRKAKMQRTIVIRRDYL 89



 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 42/47 (89%), Positives = 43/47 (91%)
 Frame = +2

Query: 272 NRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNNLKVS 412
           +RFEKRHRNMSVH SP FRDVE GDIVTIGECRPLSKTVRFN LKVS
Sbjct: 96  SRFEKRHRNMSVHCSPVFRDVEHGDIVTIGECRPLSKTVRFNVLKVS 142


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,758,558
Number of Sequences: 53049
Number of extensions: 376482
Number of successful extensions: 723
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1684597257
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)